1eb0e356b79b6f723aba17fa155e5d5506e913d8
gperez2
  Sat Nov 2 12:25:19 2024 -0700
Removing a CADD file that was used to develop the CADD 1.7 track, refs #33940

diff --git src/hg/makeDb/trackDb/human/cadd.alpha.ra src/hg/makeDb/trackDb/human/cadd.alpha.ra
deleted file mode 100644
index d22c60a..0000000
--- src/hg/makeDb/trackDb/human/cadd.alpha.ra
+++ /dev/null
@@ -1,193 +0,0 @@
-track caddSuper
-shortLabel CADD
-longLabel CADD Score for all single-basepair mutations and selected insertions/deletions
-superTrack on hide
-type bed
-visibility hide
-group phenDis
-color 100,130,160
-
-    track cadd
-    shortLabel CADD 1.6
-    longLabel CADD 1.6 Score for all possible single-basepair mutations (zoom in for scores)
-    type bigWig
-    compositeTrack on
-    parent caddSuper
-    visibility hide
-    #maxWindowToQuery 500000
-    group phenDis
-    color 100,130,160
-    html caddSuper
-    maxWindowToDraw 10000000
-    #mouseOverFunction noAverage
-    
-            track caddA
-            shortLabel Mutation: A
-            longLabel CADD 1.6 Score: Mutation is A
-            type bigWig
-            parent cadd on
-            visibility dense
-            bigDataUrl /gbdb/$D/cadd/a.bw
-            maxHeightPixels 128:20:8
-            viewLimits 10:50
-            viewLimitsMax 0:100
-    
-            track caddC
-            shortLabel Mutation: C
-            longLabel CADD 1.6 Score: Mutation is C
-            type bigWig
-            parent cadd on
-            visibility dense
-            bigDataUrl /gbdb/$D/cadd/c.bw
-            maxHeightPixels 128:20:8
-            viewLimits 10:50
-            viewLimitsMax 0:100
-    
-            track caddG
-            shortLabel Mutation: G
-            longLabel CADD 1.6 Score: Mutation is G
-            type bigWig
-            parent cadd on
-            visibility dense
-            bigDataUrl /gbdb/$D/cadd/g.bw
-            maxHeightPixels 128:20:8
-            viewLimits 10:50
-            viewLimitsMax 0:100
-    
-            track caddT
-            shortLabel Mutation: T
-            longLabel CADD 1.6 Score: Mutation is T
-            type bigWig
-            parent cadd on
-            visibility dense
-            bigDataUrl /gbdb/$D/cadd/t.bw
-            maxHeightPixels 128:20:8
-            viewLimits 10:50
-            viewLimitsMax 0:100
-    
-            track caddIns
-            shortLabel Insertions
-            longLabel CADD 1.6 Score: Insertions - label is length of insertion
-            type bigBed 9 +
-            parent cadd on
-            visibility dense
-            bigDataUrl /gbdb/$D/cadd/ins.bb
-            mouseOver Mutation: $change CADD Phred score: $phred
-            html caddSuper
-            filter.score 10:100
-            filterByRange.score on
-            filterLabel.score Show only items with PHRED scale score of
-            filterLimits.score 0:100
-            #maxWindowCoverage 40000
-            #maxItems 100000
-            #maxWindowToDraw 9000000
-            
-            track caddDel
-            shortLabel Deletions
-            longLabel CADD 1.6 Score: Deletions - label is length of deletion
-            type bigBed 9 +
-            parent cadd on
-            visibility dense
-            bigDataUrl /gbdb/$D/cadd/del.bb
-            mouseOver Mutation: $change CADD Phred score: $phred
-            html caddSuper
-            filter.score 10:100
-            filterByRange.score on
-            filterLabel.score Show only items with PHRED scale score of
-            filterLimits.score 0:100
-            #maxWindowCoverage 40000
-            #maxItems 100000
-            #maxWindowToDraw 9000000
-    
-    track cadd1_7
-    shortLabel CADD 1.7
-    longLabel CADD 1.7 Score for all possible single-basepair mutations (zoom in for scores)
-    type bigWig
-    compositeTrack on
-    parent caddSuper
-    visibility dense
-    #maxWindowToQuery 500000
-    group phenDis
-    color 100,130,160
-    html caddSuper1.7
-    maxWindowToDraw 10000000
-    #mouseOverFunction noAverage
-    
-            track cadd1_7_A
-            shortLabel Mutation: A
-            longLabel CADD 1.7 Score: Mutation is A
-            type bigWig
-            parent cadd1_7 on
-            visibility dense
-            bigDataUrl /gbdb/$D/cadd1.7/a.bw
-            maxHeightPixels 128:20:8
-            viewLimits 10:50
-            viewLimitsMax 0:100
-    
-            track cadd1_7_C
-            shortLabel Mutation: C
-            longLabel CADD 1.7 Score: Mutation is C
-            type bigWig
-            parent cadd1_7 on
-            visibility dense
-            bigDataUrl /gbdb/$D/cadd1.7/c.bw
-            maxHeightPixels 128:20:8
-            viewLimits 10:50
-            viewLimitsMax 0:100
-    
-            track cadd1_7_G
-            shortLabel Mutation: G
-            longLabel CADD 1.7 Score: Mutation is G
-            type bigWig
-            parent cadd1_7 on
-            visibility dense
-            bigDataUrl /gbdb/$D/cadd1.7/g.bw
-            maxHeightPixels 128:20:8
-            viewLimits 10:50
-            viewLimitsMax 0:100
-    
-            track cadd1_7_T
-            shortLabel Mutation: T
-            longLabel CADD 1.7 Score: Mutation is T
-            type bigWig
-            parent cadd1_7 on
-            visibility dense
-            bigDataUrl /gbdb/$D/cadd1.7/t.bw
-            maxHeightPixels 128:20:8
-            viewLimits 10:50
-            viewLimitsMax 0:100
-    
-            track cadd1_7_Ins
-            shortLabel Insertions
-            longLabel CADD 1.7 Score: Insertions - label is length of insertion
-            type bigBed 9 +
-            parent cadd1_7 on
-            visibility dense
-            bigDataUrl /gbdb/$D/cadd1.7/ins.bb
-            mouseOver Mutation: $change CADD Phred score: $phred
-            html caddSuper1.7
-            filter.score 10:100
-            filterByRange.score on
-            filterLabel.score Show only items with PHRED scale score of
-            filterLimits.score 0:100
-            #maxWindowCoverage 40000
-            #maxItems 100000
-            #maxWindowToDraw 9000000
-            
-            track cadd1_7_Del
-            shortLabel Deletions
-            longLabel CADD 1.7 Score: Deletions - label is length of deletion
-            type bigBed 9 +
-            parent cadd1_7 on
-            visibility dense
-            bigDataUrl /gbdb/$D/cadd1.7/del.bb
-            mouseOver Mutation: $change CADD Phred score: $phred
-            html caddSuper1.7
-            filter.score 10:100
-            filterByRange.score on
-            filterLabel.score Show only items with PHRED scale score of
-            filterLimits.score 0:100
-            #maxWindowCoverage 40000
-            #maxItems 100000
-            #maxWindowToDraw 9000000
-