0c126bf17c586c00c15714a69ce874c1423e774f
hiram
  Tue Oct 29 14:56:19 2024 -0700
indicate which paraHub the cluster job is on refs #34685

diff --git src/hg/utils/automation/doAugustus.pl src/hg/utils/automation/doAugustus.pl
index 28debd6..d3521ac 100755
--- src/hg/utils/automation/doAugustus.pl
+++ src/hg/utils/automation/doAugustus.pl
@@ -262,30 +262,31 @@
   chrEnd=`echo \$twoBit |  sed -e 's/.*2bit://;' | awk -F':' '{print \$2}' | sed -e 's/.*-//;'`
   echo "runOne \$chrStart \$chrEnd {check in exists+ $buildDir/fasta/\${chr}.fa} {check out exists+ gtf/\$chr/\$chr.\$chrStart.\$chrEnd.gtf.gz}"
 done > jobList
 
 (grep partBundles ../partition/part.list || /bin/true) | while read bundleName
 do
   B=`basename \$bundleName | sed -e 's/.lst//;'`
   echo "runOne 0 0 {check in exists+ $buildDir/fasta/\${B}.fa} {check out exists+ gtf/\${B}/\${B}.0.0.gtf.gz}"
 done >> jobList
 
 chmod +x runOne
 
 $paraRun
 _EOF_
   );
+  `touch "$runDir/para_hub_$paraHub"`;
   $bossScript->execute();
 } # doAugustus
 
 #########################################################################
 # * step: make gp [workhorse]
 sub doMakeGp {
   my $runDir = $buildDir;
   &HgAutomate::mustMkdir($runDir);
 
   # First, make sure we're starting clean.
   if (! -e "$runDir/run.augustus/run.time") {
     die "doMakeGp: the previous step augustus did not complete \n" .
       "successfully ($buildDir/run.augustus/run.time does not exist).\nPlease " .
       "complete the previous step: -continue=augustus\n";
   } elsif (-e "$runDir/$db.augustus.bb" ) {