dac1dd5605a7a3a9dab41ef36b3859953c454ad2 hiram Tue Oct 29 15:03:43 2024 -0700 indicate which paraHub the cluster job is on refs #34685 diff --git src/hg/utils/automation/doRepeatModeler.pl src/hg/utils/automation/doRepeatModeler.pl index 4daa16f..84d616e 100755 --- src/hg/utils/automation/doRepeatModeler.pl +++ src/hg/utils/automation/doRepeatModeler.pl @@ -205,30 +205,31 @@ rsync --exclude "do.log" -a -P ./ "${runDir}/" cd "${runDir}" rm -fr "\${tmpDir}/" chmod 775 "${runDir}" ' > oneJob chmod +x oneJob printf "oneJob ${db} {check out line+ ${db}-rmod.log}\n" > jobList para make $parasolOpts jobList para check para time > run.time cat run.time "${RepeatModeler}" -version > "${runDir}/modelerVersion.txt" _EOF_ ); + `touch "$runDir/para_hub_$paraHub"`; $bossScript->execute() if (! $opt_debug); } # doCluster ######################################################################### # * step: cleanup [workhorse] sub doCleanup { my $runDir = "$buildDir"; # First, make sure previous step has completed: if ( ! $opt_debug ) { if ( -s "$runDir/run.time" && ! -s "$runDir/${db}-families.fa" ) { die "cleanup: previous 'cluster' step appears to be broken, run.time is present but ${db}-families.fa is not present ?"; } if ( ! -s "$runDir/${db}-families.fa" ) { die "cleanup previous 'libResult' step has not completed, ${db}-families.fa not present\n";