Commits for angie

v474_preview to v474_preview2 (2024-11-04 to 2024-11-11) v474

9bc8d3c62d5b420e0ecbd9afe87c9a52c4103739 Fri Oct 25 10:56:05 2024 -0700

• Move sessionData.c up from hgSession/ to lib/ so that hgPhyloPlace can use sessionDataSaveTrashFile.
  • src/hg/hgSession/hgSession.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgSession/hgSession.h - lines changed 5, context: html, text, full: html, text
  • src/hg/hgSession/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/hgSession/sessionData.c - lines changed 513, context: html, text, full: html, text
  • src/hg/inc/sessionData.h - lines changed 21, context: html, text, full: html, text
  • src/hg/lib/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/sessionData.c - lines changed 514, context: html, text, full: html, text

d060b70a11099fb693b769c781796b6b577715fb Fri Nov 1 12:47:25 2024 -0700

• If sessionDataDir is in hg.conf, make a new UI option to request that the Auspice JSON output files don't expire after two days, using sessionDataDir/hgPhyloPlace/ for storage.
  • src/hg/hgPhyloPlace/hgPhyloPlace.c - lines changed 8, context: html, text, full: html, text
  • src/hg/hgPhyloPlace/phyloPlace.c - lines changed 21, context: html, text, full: html, text

2a8b200a7ce182a27d6f090fe0729e089d3cf9b0 Mon Nov 4 11:31:48 2024 -0800

• Store Auspice JSON files gzip-compressed (.json --> .json.gz). Nextstrain display requires an Apache config change to serve .json with 'Content-Encoding: gzip' header instead of .json.gz.
  • src/hg/hgPhyloPlace/phyloPlace.c - lines changed 13, context: html, text, full: html, text
  • src/hg/hgPhyloPlace/treeToAuspiceJson.c - lines changed 23, context: html, text, full: html, text