Commits for gperez2

v474_preview to v474_preview2 (2024-11-04 to 2024-11-11) v474

fd2ffa40617f21bcddc57634e25ca4eb5c63d8b1 Mon Nov 4 12:04:08 2024 -0800

• Updating the track description page and adding pennant icons to the difficult regions from GIAB tracks, refs #32715
  • src/hg/makeDb/trackDb/human/hg38/problematic.html - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/problematic.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hs1/problematic.html - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hs1/problematic.ra - lines changed 1, context: html, text, full: html, text

05c63fe738c053ec8ef8de5b13bf2159ae64772b Tue Nov 5 09:52:08 2024 -0800

• Adding new paper to the difficult regions from GIAB references per user request, refs #32715
  • src/hg/makeDb/trackDb/human/hg38/problematic.html - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hs1/problematic.html - lines changed 7, context: html, text, full: html, text

3a506cd303b10c3c81e3196e990d4487f8757e2e Tue Nov 5 11:07:01 2024 -0800

• Announcing the release of the difficult regions from GIAB tracks, refs #32715
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 25, context: html, text, full: html, text
  • src/hg/htdocs/indexNews.html - lines changed 11, context: html, text, full: html, text

d9ed0bc0c700980005dd57943ac7e176bf8470b0 Tue Nov 5 11:15:07 2024 -0800

• Updating the hs1 track link for difficult regions from GIAB tracks, refs #32715
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 1, context: html, text, full: html, text

687239fe5e1d9407369eb985448dc1f844b261b0 Tue Nov 5 11:24:23 2024 -0800

• Moving the programaticGIAB.txt text to the problematic.txt makedoc, refs #32715
  • src/hg/makeDb/doc/hg38/problematic.txt - lines changed 51, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/problematicGIAB.txt - lines changed 49, context: html, text, full: html, text

2e2a7ae5365a981764f16c1797062fbd87f39b87 Thu Nov 7 15:39:08 2024 -0800

• Staging 3 All GENCODE tracks, refs #34215 #34214 #34217
  • src/hg/makeDb/trackDb/human/hg19/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV46lift37.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV47lift37.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV46.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV47.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeVM35.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeVM36.ra - lines changed 1, context: html, text, full: html, text

c5ce282587dbf8ec6a7b28470e0449ca6af9e250 Fri Nov 8 15:24:16 2024 -0800

• Announcing the release of All GENCODE for hg38, hg19 (V47), and mm39 (VM36). refs #34215 #34214 #34217
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 39, context: html, text, full: html, text
  • src/hg/htdocs/indexNews.html - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV47lift37.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV47.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeVM36.ra - lines changed 1, context: html, text, full: html, text