6bb32f2687b57a34df9189d8126975f2dca12ee2 hiram Fri Nov 8 03:35:30 2024 -0800 updating VGP with 87 new assemblies refs #29545 diff --git src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt index 417b1df..703bee0 100644 --- src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt +++ src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt @@ -2,30 +2,31 @@ 38626 GCA_003287225.2_phaCin_HiC mammals 30522 GCA_003369685.2_UOA_Angus_1 mammals 59729 GCA_003957525.1_bTaeGut1_v1.h birds 59729 GCA_003957525.2_bTaeGut1.4.alt birds 9244 GCA_003957555.2_bCalAnn1_v1.p birds 59729 GCA_003957565.2_bTaeGut1_v1.p birds 9244 GCA_003957575.1_bCalAnn1_v1.h birds 2489341 GCA_004011185.1_bStrHab1_v1.h birds 2489341 GCA_004027225.2_bStrHab1.2.pri birds 9258 GCA_004115175.2_mOrnAna1.alt.v3 mammals 9258 GCA_004115215.3_mOrnAna1.pri.v3 mammals 89673 GCA_004115245.1_mPhyDis1_v1.h mammals 89673 GCA_004115245.2_mPhyDis1.alti.v3 mammals 59479 GCA_004115265.2_mRhiFer1_v1.p mammals 59479 GCA_004115295.1_mRhiFer1_v1.h mammals +40151 GCA_005190385.3_NGI_Narwhal_2 mammals 63155 GCA_007364235.1_fArcCen1_v1.h fish 63155 GCA_007364275.2_fArcCen1 fish 1825980 GCA_007399395.1_rGopEvg1_v1.alt reptiles 61383 GCA_007474575.1_mLynCan4_v1.alt mammals 61383 GCA_007474575.2_mLynCan4.alt.v2 mammals 28689 GCA_008658355.1_bAlcTor1_alternate birds 28689 GCA_008658365.1_bAlcTor1_primary birds 9771 GCA_008658375.1_mBalMus1_alternate mammals 9771 GCA_008658375.2_mBalMus1.alt.v2 mammals 42100 GCA_008692045.1_mPhoSin1.alt mammals 59729 GCA_008822115.3_bTaeGut2.mat.v3 birds 59729 GCA_008822125.1_bTaeGut2pat birds 1196302 GCA_009651025.1_bCorMon1.alt birds 9704 GCA_009762295.1_mZalCal1.alt mammals 9704 GCA_009762295.2_mZalCal1.alt.v2 mammals @@ -158,33 +159,35 @@ 34787 GCA_020745675.1_fTauAds1.alt.cur fish 34787 GCA_020745685.1_fTauAds1.pri.cur fish 243314 GCA_020745695.1_bHemCom1.alt.cur birds 243314 GCA_020745705.1_bHemCom1.pri.cur birds 170820 GCA_020745735.1_sHemOce1.pat.X.cur. sharks 170820 GCA_020745765.1_sHemOce1.mat.decon sharks 1118847 GCA_020745775.1_bTheCae1.pri.cur birds 1118847 GCA_020745805.1_bTheCae1.alt.cur birds 297711 GCA_020746095.1_bTroSur1.alt.cur birds 297711 GCA_020746105.1_bTroSur1.pri.cur birds 439704 GCA_020800305.1_bPorHoc1.mat.Z.cur birds 439704 GCA_020801775.1_bPorHoc1.pat.decon birds 77932 GCA_020826835.1_mDicBic1.pat.decon mammals 77932 GCA_020826845.1_mDicBic1.mat.cur mammals 9430 GCA_022682395.1_HLdesRot8B mammals +9430 GCA_022682395.2_HLdesRot8B.1 mammals 9430 GCA_022682495.1_HLdesRot8A mammals 159646 GCA_023053635.1_rElgMul1.0.p reptiles 159646 GCA_023053635.2_rElgMul1.1.pri reptiles +2917703 GCA_023333525.1_rAspTig1.0.p reptiles 64668 GCA_023344045.1_bLagMut1_alternate birds 345164 GCA_023634085.1_bFalChe1.pri birds 345164 GCA_023634115.1_bFalChe1.alt birds 8954 GCA_023634155.1_bFalPer1.pri birds 8954 GCA_023634185.1_bFalPer1.alt birds 345155 GCA_023634305.1_bFalBia1.alt birds 46513 GCA_023637925.1_DD_ASM_B1a birds 46513 GCA_023637945.1_DD_ASM_B1 birds 345155 GCA_023638135.1_bFalBia1.pri birds 48850 GCA_023851605.1_mTamTet1.pri mammals 48850 GCA_023853755.1_mTamTet1.alt mammals 109475 GCA_024140225.1_mSunEtr1.alt.cur mammals 99487 GCA_024166345.1_mEleMax1_alternate_haplotype mammals 9031 GCA_024206055.2_ASM2420605v2 birds 246179 GCA_024294585.1_rVipLat1.pri reptiles @@ -267,34 +270,39 @@ 75485 GCA_028500815.1_bRisTri1.patW.cur.20221130 birds 34844 GCA_028500835.1_mEreDor1.alt mammals 75485 GCA_028501385.1_bRisTri1.mat.cur.20221130 birds 27606 GCA_028564815.1_mEubGla1.hap2 mammals 27606 GCA_028571275.1_mEubGla1.hap1 mammals 77598 GCA_028571665.1_mHetBru1.alt mammals 77598 GCA_028571685.1_mHetBru1.pri mammals 9226 GCA_028858555.1_bAraAra1.hap2 birds 9117 GCA_028858595.1_bGruAme1.pat birds 57412 GCA_028858625.1_bColStr4.hap2 birds 57412 GCA_028858625.2_bColStr4.1.hap2 birds 57412 GCA_028858725.1_bColStr4.hap1 birds 9226 GCA_028858755.1_bAraAra1.hap1 birds 9598 GCA_028858805.1_NHGRI_mPanTro3-v1.1-hic.freeze_alt primates 9598 GCA_028858805.2_NHGRI_mPanTro3-v2.0_alt primates +9597 GCA_028858825.2_NHGRI_mPanPan1-v2.0_pat primates 9590 GCA_028878085.2_NHGRI_mSymSyn1-v2.0_alt primates +9590 GCA_028878085.3_NHGRI_mSymSyn1-v2.0_alt primates +9595 GCA_028885475.2_NHGRI_mGorGor1-v2.0_pat primates 9600 GCA_028885525.1_NHGRI_mPonPyg2-v1.1-hic.freeze_alt primates 9600 GCA_028885525.2_NHGRI_mPonPyg2-v2.0_alt primates 9601 GCA_028885685.2_NHGRI_mPonAbe1-v2.0_alt primates +2202111 GCA_029215775.1_rAnnSte1.0.hap1 reptiles +2202111 GCA_029215795.1_rAnnSte1.0.hap2 reptiles 327740 GCA_029493135.1_aHylSar1.hap2 amphibians 2546036 GCA_029633845.1_fLamInc1.hap1 fish 27720 GCA_029633855.1_fHopMal1.hap1 fish 27720 GCA_029633855.2_fHopMal1.hap1 fish 27720 GCA_029633875.1_fHopMal1.hap2 fish 460621 GCA_029931755.1_rEulEur1.hap2 reptiles 9785 GCA_030014295.1_mLoxAfr1.hap2 mammals 2290929 GCA_030014385.1_fTriRos1.hap1 fish 2290929 GCA_030015355.1_fTriRos1.hap2 fish 94835 GCA_030020295.1_rGavGan2.hap2 reptiles 9785 GCA_030020305.1_mLoxAfr1.hap1 mammals 94835 GCA_030020385.1_rGavGan2.hap1 reptiles 143292 GCA_030020945.1_mManPen7.hap2 mammals 29137 GCA_030020955.1_mDugDug1.hap2 mammals 575201 GCA_030028035.1_mHipAmp2.hap1 mammals @@ -384,30 +392,31 @@ 7924 GCA_036365475.1_fAmiCal2.hap2 fish 7792 GCA_036365495.1_sHetFra1.hap2 sharks 7792 GCA_036365525.1_sHetFra1.hap1 sharks 7924 GCA_036373705.1_fAmiCal2.hap1 fish 9725 GCA_036417435.1_mIniGeo1.hap1 mammals 9725 GCA_036417475.1_mIniGeo1.hap2 mammals 8790 GCA_036417515.1_bDroNov1.hap2 birds 187382 GCA_036417535.1_bChlMac1.mat birds 48849 GCA_036417665.1_bPasDom1.hap1 birds 2696672 GCA_036417845.1_bAptMan1.hap1 birds 48849 GCA_036417895.1_bPasDom1.hap2 birds 2696672 GCA_036417975.1_bAptMan1.hap2 birds 187382 GCA_036418225.1_bChlMac1.pat birds 9796 GCA_036418255.1_mEquCab1.mat mammals 9796 GCA_036426135.1_mEquCab1.pat mammals +152111 GCA_036784965.1_fSalAlp2_p1.0 fish 1570318 GCA_036850655.1_bMerOct1.hap2 birds 59482 GCA_036850765.1_mSacBil1_pri_phased_curated mammals 249018 GCA_036850995.1_mSacLep1_pri_phased_curated mammals 1570318 GCA_036873955.1_bMerOct1.hap1 birds 1343680 GCA_036971175.1_sNarBan1.hap2 sharks 1343680 GCA_036971445.1_sNarBan1.hap1 sharks 372321 GCA_036971685.1_bPatFas1.hap2 birds 10058 GCA_037038515.1_mMicPen1.hap1 mammals 249017 GCA_037038545.1_mRhyNas2.hap1 mammals 249017 GCA_037038555.1_mRhyNas2.hap2 mammals 54267 GCA_037038625.1_fFunDia1.hap2 fish 54267 GCA_037039145.1_fFunDia1.hap1 fish 10058 GCA_037039175.1_mMicPen1.hap2 mammals 1552295 GCA_037157525.1_mMolAlv2.hap1 mammals 678569 GCA_037157625.1_bLatDis1.hap2 birds @@ -426,34 +435,52 @@ 8014 GCA_038355195.1_fOsmMor3.pri fish 27634 GCA_038363095.1_mArtLit.hap1 mammals 27634 GCA_038363095.2_mArtLit.hap1 mammals 51014 GCA_038363145.1_mArtInt1.hap1 mammals 51014 GCA_038363225.1_mArtInt1.hap2 mammals 288555 GCA_038501915.1_aXenPet1.maternal.cur amphibians 288555 GCA_038501925.1_aXenPet1.paternal.cur amphibians 2994998 GCA_039655065.1_mGloMut1.hap1 mammals 2994998 GCA_039656995.1_mGloMut1.hap2 mammals 151761 GCA_039720425.1_bAmaOch1.hap2 birds 151761 GCA_039720435.1_bAmaOch1.hap1 birds 109706 GCA_039877575.1_fChaTrf1.hap2 fish 109706 GCA_039877785.1_fChaTrf1.hap1 fish 46218 GCA_039878515.1_bCotChi1.hap1 birds 46218 GCA_039878825.1_bCotChi1.hap2 birds +2997257 GCA_039880925.1_mMolNig1.hap2 mammals +2997257 GCA_039880945.1_mMolNig1.hap1 mammals 48277 GCA_039906465.1_bAegAlb1.hap2 birds 82174 GCA_039906515.1_mPseCra1.hap1 mammals 82174 GCA_039906525.1_mPseCra1.hap2 mammals 48277 GCA_039906565.1_bAegAlb1.hap1 birds +8439 GCA_040206675.1_aAscTru1.hap2 amphibians +8439 GCA_040206685.1_aAscTru1.hap1 amphibians +8801 GCA_040807015.1_bStrCam1.hap2 birds +76066 GCA_040894005.1_aEngPut4.maternal amphibians +76066 GCA_040894015.1_aEngPut4.paternal amphibians +1041117 GCA_040894355.1_rMyuGeo1.pri.20230808 reptiles +752182 GCA_040937895.1_aHypRig1.alt amphibians +3154068 GCA_040954595.1_ASM4095459v1 invertebrate +3154068 GCA_040954625.1_ASM4095462v1 invertebrate +7918 GCA_040954845.1_fLepOcu1.hap1 fish +9622 GCA_040955645.1_LycPic1.final.hap1 mammals +9622 GCA_040955705.1_LycPic1.final.hap2 mammals +9773 GCA_041834305.1_ASM4183430v1 mammals +3127111 GCA_042242105.1_fPemKlu1.hap1 fish +3127111 GCA_042242125.1_fPemKlu1.hap2 fish +394691 GCA_043250625.1_fSebFas1.pri fish 8154 GCA_900246225.5_fAstCal1.3 fish 64144 GCA_900324465.2_fAnaTes1.2 fish 64144 GCA_900324465.3_fAnaTes1.3 fish 205130 GCA_900324485.3_fMasArm1.3 fish 56716 GCA_900634415.1_fCotGob3.1 fish 56716 GCA_900634435.1_fCotGob3.1_alternate_haplotype fish 210632 GCA_900634625.2_fParRan2.2 fish 441366 GCA_900634775.1_fGouWil2.1 fish 441366 GCA_900634775.2_fGouWil2.2 fish 64144 GCA_900650485.1_fAnaTes1.2_alternate_haplotype fish 441366 GCA_900650505.1_fGouWil2.1_alternate_haplotype fish 210632 GCA_900651595.1_fParRan2.1_alternate_haplotype fish 158456 GCA_900651605.1_fBetSpl5.1_alternate_haplotype fish 158456 GCA_900651605.2_fBetSpl5.4_alternate_haplotype fish 299321 GCA_900700345.2_fDenClu1.1_alternate_haplotype fish @@ -617,30 +644,31 @@ 431183 GCA_963082875.1_kaCorEumy4.1 otherChordates 148596 GCA_963210275.1_bFalPun1.1_alternate_haplotype birds 148596 GCA_963210335.1_bFalPun1.1 birds 98922 GCA_963242275.1_mMyoDau2.1_alternate_haplotype mammals 232653 GCA_963243765.1_bPsiEch3.1_alternate_haplotype birds 232653 GCA_963264785.1_bPsiEch3.1 birds 948025 GCA_963280865.1_fGymBra2.1 fish 948025 GCA_963281105.1_fGymBra2.1_alternate_haplotype fish 56720 GCA_963383615.1_fLipPho2.1 fish 56720 GCA_963383635.1_fLipPho2.1_alternate_haplotype fish 39082 GCA_963383645.1_mMusAve1.1 mammals 39082 GCA_963383665.1_mMusAve1.1_alternate_haplotype mammals 195075 GCA_963422515.1_fBleOce1.1 fish 1090481 GCA_963454915.1_fGymMic1.1 fish 61862 GCA_963455305.1_mPleAur1.1 mammals +9731 GCA_963455315.2_mGloMel1.2 mammals 29065 GCA_963455335.1_mMarMar1.1 mammals 8103 GCA_963457625.1_fCycLum2.1 fish 90074 GCA_963457635.1_fMicVar1.1 fish 196075 GCA_963457725.1_fSprSpr1.1 fish 37598 GCA_963513975.1_bFriCoe1.1 birds 223862 GCA_963514005.1_sRajBra1.1 sharks 48171 GCA_963514085.1_fCheLab1.1 fish 426098 GCA_963514095.1_fEutGur1.1 fish 127875 GCA_963662255.1_bCinCin1.1 birds 94984 GCA_963691815.1_fEchVip8.1 fish 13677 GCA_963691925.1_fScoSco1.1 fish 29151 GCA_963692335.1_fOsmEpe2.1 fish 27697 GCA_963854185.1_fSarPil1.1 fish 52904 GCA_963854745.1_fScoMax1.1 fish 473322 GCA_963921795.1_fNanAch1.1 fish @@ -657,113 +685,149 @@ 28680 GCA_963932015.1_bAnaAcu1.1 birds 8915 GCA_963932225.1_bLarFus1.1 birds 454631 GCA_963969265.1_fRhaChi2.1 fish 948063 GCA_963971535.1_fNotCoa1.1 fish 443705 GCA_963989245.1_fNanAnt1.1 fish 197941 GCA_963989345.1_bClaHye2.1 birds 38527 GCA_963993115.1_fAbrBra2.1 fish 81636 GCA_964030765.1_fMicPou1.1 fish 132585 GCA_964034855.1_bAnsBra1.1 birds 30387 GCA_964035555.1_bNetRuf1.1 birds 31919 GCA_964059295.1_bNumArq3.hap2.1 birds 107022 GCA_964059595.1_bBucCla1.1 birds 109479 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