bc2575203fb033d240ca8301ccb393f76ce15a1c
jnavarr5
  Tue Nov 5 16:48:36 2024 -0800
Adding the DECIPHER DDG2P track for hg38 and hg19 on hgwdev, refs #34097

diff --git src/hg/makeDb/trackDb/human/decipher.alpha.ra src/hg/makeDb/trackDb/human/decipher.alpha.ra
index 25ac47d..6a518f5 100644
--- src/hg/makeDb/trackDb/human/decipher.alpha.ra
+++ src/hg/makeDb/trackDb/human/decipher.alpha.ra
@@ -1,57 +1,74 @@
 track decipherContainer
 superTrack on
 shortLabel DECIPHER
 longLabel DECIPHER
 cartVersion 7
 group phenDis
 
     track decipher
     shortLabel DECIPHER CNVs
     longLabel DECIPHER CNVs
     group phenDis
     visibility pack
     type bigBed 9 +
     itemRgb on
     tableBrowser off knownCanonToDecipher knownToDecipher decipherRaw
     bigDataUrl /gbdb/$D/decipher/decipherCnv.bb
     url https://www.deciphergenomics.org/patient/$$
     urlLabel Decipher Patient View:
     filter.size 0
     filterByRange.size on
     filterLimits.size 2:170487333
     filterValues.variant_class Amplification,Copy-Number Gain,Deletion,Duplication,Duplication/Trip
     filterValues.pathogenicity Benign,Likely Benign,Likely Pathogenic,Pathogenic,Uncertain,Unknown
     mergeSpannedItems on
     searchIndex name
     mouseOverField _mouseOvera
-    html decipher
+    html decipherContainer.html
     parent decipherContainer
 
     track decipherSnvs
     shortLabel DECIPHER SNVs
     longLabel DECIPHER: Chromosomal Imbalance and Phenotype in Humans (SNVs)
     group phenDis
     visibility pack
     color 0,0,0
     type bed 4
     tableBrowser off decipherSnvsRaw
     prevExonText Left edge
     nextExonText Right edge
-    html decipher
+    html decipherContainer.html
     parent decipherContainer
 
+    track decipherDDG2P
+    parent decipherContainer
+    type bigBed 9 +
+    shortLabel DECIPHER DDG2P
+    longLabel DECIPHER: Developmental Disorders panel in the Gene2Phenotype database (DDG2P)
+    bigDataUrl /gbdb/$D/decipher/ddg2pSyndromes.bb
+    group phenDis
+    visibility pack
+    mouseOver <b>Position</b>: $chrom:${chromStart}-${chromEnd}<br> <b>Type of CNV</b>: $type<br> <b>Frequency of CNV</b>: $frequency<br> <b>Number of Observations</b>: $observations<br> <b>Sample Size of Study</b>: $sample_size<br>
+    html decipherContainer.html
+    searchIndex name
+
+
 searchTable decipher
 searchMethod exact
 searchType bigBed
 
+searchTable decipherDDG2P
+searchMethod exact
+searchType bigBed
+
 searchName decipherId
 searchTable decipher
 termRegex [0-9]+
 searchType bed
 searchPriority 50
 
 searchName decipherSnvsId
 searchTable decipherSnvs
 termRegex [0-9]+
 searchType bed
 searchPriority 50