66635461c471e0fa874ab79b300ce66b55370ace markd Sun Nov 10 07:21:58 2024 -0800 Add in GENCODE hgc gene and transcript name display in table, as check for HGCN is missing miRNAs not in HGNC but in mirBASE. diff --git src/hg/hgc/gencodeClick.c src/hg/hgc/gencodeClick.c index 1af8854..80a6f92 100644 --- src/hg/hgc/gencodeClick.c +++ src/hg/hgc/gencodeClick.c @@ -440,31 +440,36 @@ boolean haveGeneSymbolSource, struct wgEncodeGencodeGeneSymbol *geneSymbolSource) /* write basic HTML info for all genes */ { // basic gene and transcript information printf("
Transcript | Gene | |
---|---|---|
GENCODE id"); prTdEnsIdAnchor(transAttrs->transcriptId, (isGrcH37Native(tdb) ? ensemblH37TranscriptIdUrl: ensemblTranscriptIdUrl)); prTdEnsIdAnchor(transAttrs->geneId, (isGrcH37Native(tdb) ? ensemblH37GeneIdUrl : ensemblGeneIdUrl)); printf(" | ||
Name"); +printf(" | %s", transAttrs->transcriptName); +printf(" | %s", transAttrs->geneName); +printf(" |
Protein id"); if (strlen(transAttrs->proteinId) > 0) prTdEnsIdAnchor(transAttrs->proteinId, (isGrcH37Native(tdb) ? ensemblH37ProteinIdUrl: ensemblProteinIdUrl)); else printf(" | "); printf(" | "); printf(" |
HAVANA manual id"); printf(" | %s", transAttrs->havanaTranscriptId); printf(" | %s", transAttrs->havanaGeneId); |