8b758f1e95366bca0ee3ad1c0b5584c16647b793 hiram Wed Dec 4 14:46:28 2024 -0800 update to 2024-11-26 version refs #34370 diff --git src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt index 89a3118..463398c 100644 --- src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt +++ src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt @@ -162,46 +162,48 @@ 243314 GCA_020745695.1_bHemCom1.alt.cur birds 243314 GCA_020745705.1_bHemCom1.pri.cur birds 170820 GCA_020745735.1_sHemOce1.pat.X.cur. sharks 170820 GCA_020745765.1_sHemOce1.mat.decon sharks 1118847 GCA_020745775.1_bTheCae1.pri.cur birds 1118847 GCA_020745805.1_bTheCae1.alt.cur birds 297711 GCA_020746095.1_bTroSur1.alt.cur birds 297711 GCA_020746105.1_bTroSur1.pri.cur birds 439704 GCA_020800305.1_bPorHoc1.mat.Z.cur birds 439704 GCA_020801775.1_bPorHoc1.pat.decon birds 77932 GCA_020826835.1_mDicBic1.pat.decon mammals 77932 GCA_020826845.1_mDicBic1.mat.cur mammals 9430 GCA_022682395.1_HLdesRot8B mammals 9430 GCA_022682395.2_HLdesRot8B.1 mammals 9430 GCA_022682495.1_HLdesRot8A mammals +9430 GCA_022682495.2_HLdesRot8A.1 mammals 159646 GCA_023053635.1_rElgMul1.0.p reptiles 159646 GCA_023053635.2_rElgMul1.1.pri reptiles 2917703 GCA_023333525.1_rAspTig1.0.p reptiles 64668 GCA_023344045.1_bLagMut1_alternate birds 345164 GCA_023634085.1_bFalChe1.pri birds 345164 GCA_023634115.1_bFalChe1.alt birds 8954 GCA_023634155.1_bFalPer1.pri birds 8954 GCA_023634185.1_bFalPer1.alt birds 345155 GCA_023634305.1_bFalBia1.alt birds 46513 GCA_023637925.1_DD_ASM_B1a birds 46513 GCA_023637945.1_DD_ASM_B1 birds 345155 GCA_023638135.1_bFalBia1.pri birds 48850 GCA_023851605.1_mTamTet1.pri mammals 48850 GCA_023853755.1_mTamTet1.alt mammals 109475 GCA_024140225.1_mSunEtr1.alt.cur mammals 99487 GCA_024166345.1_mEleMax1_alternate_haplotype mammals +9031 GCA_024206055.2_GGswu birds 9031 GCA_024206055.2_ASM2420605v2 birds 246179 GCA_024294585.1_rVipLat1.pri reptiles 246179 GCA_024294605.1_rVipLat1.alt reptiles 58319 GCA_024453875.1_ASM2445387v1 fish 10013 GCA_024803745.1_mThoBot1.0.p mammals 48708 GCA_025094165.1_mMesDen1_alternate_haplotype mammals 286002 GCA_025201965.1_rGopFla2.pat.asm reptiles 48708 GCA_025265405.1_mMesDen1_primary_haplotype mammals 70687 GCA_026018925.1_mTupTan1 mammals 372063 GCA_026229955.1_mPerMan1.0.p mammals 124745 GCA_026230045.1_mCorTow1.0.hap2 mammals 202280 GCA_026419925.1_bHarHar1 birds 27615 GCA_026419965.1_mKogBre1_haplotype_1 mammals 27615 GCA_026419985.1_mKogBre1_haplotype_2 mammals 8319 GCA_026652325.1_ASM2665232v1 amphibians @@ -280,30 +282,31 @@ 57412 GCA_028858625.1_bColStr4.hap2 birds 57412 GCA_028858625.2_bColStr4.1.hap2 birds 57412 GCA_028858725.1_bColStr4.hap1 birds 9226 GCA_028858755.1_bAraAra1.hap1 birds 9598 GCA_028858805.1_NHGRI_mPanTro3-v1.1-hic.freeze_alt primates 9598 GCA_028858805.2_NHGRI_mPanTro3-v2.0_alt primates 9597 GCA_028858825.2_NHGRI_mPanPan1-v2.0_pat primates 9590 GCA_028878085.2_NHGRI_mSymSyn1-v2.0_alt primates 9590 GCA_028878085.3_NHGRI_mSymSyn1-v2.0_alt primates 9595 GCA_028885475.2_NHGRI_mGorGor1-v2.0_pat primates 9600 GCA_028885525.1_NHGRI_mPonPyg2-v1.1-hic.freeze_alt primates 9600 GCA_028885525.2_NHGRI_mPonPyg2-v2.0_alt primates 9601 GCA_028885685.2_NHGRI_mPonAbe1-v2.0_alt primates 2202111 GCA_029215775.1_rAnnSte1.0.hap1 reptiles 2202111 GCA_029215795.1_rAnnSte1.0.hap2 reptiles +9595 GCA_029281585.3_NHGRI_mGorGor1-v2.1_pri primates 327740 GCA_029493135.1_aHylSar1.hap2 amphibians 2546036 GCA_029633845.1_fLamInc1.hap1 fish 27720 GCA_029633855.1_fHopMal1.hap1 fish 27720 GCA_029633855.2_fHopMal1.hap1 fish 27720 GCA_029633875.1_fHopMal1.hap2 fish 460621 GCA_029931755.1_rEulEur1.hap2 reptiles 9785 GCA_030014295.1_mLoxAfr1.hap2 mammals 2290929 GCA_030014385.1_fTriRos1.hap1 fish 2290929 GCA_030015355.1_fTriRos1.hap2 fish 94835 GCA_030020295.1_rGavGan2.hap2 reptiles 9785 GCA_030020305.1_mLoxAfr1.hap1 mammals 94835 GCA_030020385.1_rGavGan2.hap1 reptiles 143292 GCA_030020945.1_mManPen7.hap2 mammals 29137 GCA_030020955.1_mDugDug1.hap2 mammals 575201 GCA_030028035.1_mHipAmp2.hap1 mammals @@ -465,30 +468,32 @@ 8296 GCA_040938575.1_UKY_AmexF1_1 amphibians 7888 GCA_040939525.1_ASM4093952v1 fish 3154068 GCA_040954595.1_ASM4095459v1 invertebrate 3154068 GCA_040954625.1_ASM4095462v1 invertebrate 7918 GCA_040954845.1_fLepOcu1.hap1 fish 9622 GCA_040955645.1_LycPic1.final.hap1 mammals 9622 GCA_040955705.1_LycPic1.final.hap2 mammals 9773 GCA_041834305.1_ASM4183430v1 mammals 3127111 GCA_042242105.1_fPemKlu1.hap1 fish 3127111 GCA_042242125.1_fPemKlu1.hap2 fish 9545 GCA_043159975.1_mMacNem.hap1 mammals 9545 GCA_043161795.1_mMacNem.hap2 mammals 394691 GCA_043250625.1_fSebFas1.pri fish 320637 GCA_043290065.1_mRhyPet1.hap2 mammals 320637 GCA_043290085.1_mRhyPet1.hap1 mammals +55135 GCA_044704955.1_sPriJap1.hap1 sharks +55135 GCA_044704965.1_sPriJap1.hap2 sharks 8154 GCA_900246225.5_fAstCal1.3 fish 64144 GCA_900324465.2_fAnaTes1.2 fish 64144 GCA_900324465.3_fAnaTes1.3 fish 205130 GCA_900324485.3_fMasArm1.3 fish 56716 GCA_900634415.1_fCotGob3.1 fish 56716 GCA_900634435.1_fCotGob3.1_alternate_haplotype fish 210632 GCA_900634625.2_fParRan2.2 fish 441366 GCA_900634775.1_fGouWil2.1 fish 441366 GCA_900634775.2_fGouWil2.2 fish 64144 GCA_900650485.1_fAnaTes1.2_alternate_haplotype fish 441366 GCA_900650505.1_fGouWil2.1_alternate_haplotype fish 210632 GCA_900651595.1_fParRan2.1_alternate_haplotype fish 158456 GCA_900651605.1_fBetSpl5.1_alternate_haplotype fish 158456 GCA_900651605.2_fBetSpl5.4_alternate_haplotype fish 299321 GCA_900700345.2_fDenClu1.1_alternate_haplotype fish @@ -754,43 +759,49 @@ 8843 GCA_964211785.1_bAnsAns1.hap2.1 birds 219593 GCA_964211795.1_bAytFer1.hap2.1 birds 219593 GCA_964211825.1_bAytFer1.hap1.1 birds 8843 GCA_964211835.1_bAnsAns1.hap1.1 birds 109481 GCA_964212025.1_mMyoNat1.hap2.1 mammals 109481 GCA_964212035.1_mMyoNat1.hap1.1 mammals 112232 GCA_964213995.1_sMusAst1.hap1.1 sharks 112232 GCA_964214025.1_sMusAst1.hap2.1 sharks 65482 GCA_964234715.1_rPodMel1.hap1.1 reptiles 65482 GCA_964234825.1_rPodMel1.hap2.1 reptiles 9123 GCA_964237395.1_bGalChl1.hap2.1 birds 9986 GCA_964237555.1_mOryCun1.1 mammals 9123 GCA_964237585.1_bGalChl1.hap1.1 birds 140042 GCA_964251985.1_rPodErh1.hap2.1 reptiles 140042 GCA_964252035.1_rPodErh1.hap1.1 reptiles +256425 GCA_964261635.1_aLisHel1.1 amphibians +8324 GCA_964263255.1_aLisVul1.1 amphibians 59291 GCA_964263835.1_fCorLav1.hap2.1 fish 59291 GCA_964263955.1_fCorLav1.hap1.1 fish 59465 GCA_964264875.1_mNycLei1.hap1.1 mammals 59465 GCA_964264895.1_mNycLei1.hap2.1 mammals 106175 GCA_964266715.1_fMicKit1.1 fish 65481 GCA_964270875.1_rPodFil1.hap2.1 reptiles 65481 GCA_964270895.1_rPodFil1.hap1.1 reptiles 90246 GCA_964270905.1_mLagAcu1.hap1.1 mammals 90246 GCA_964270935.1_mLagAcu1.hap2.1 mammals 177147 GCA_964273445.1_bStrDea1.hap1.1 birds 177147 GCA_964273585.1_bStrDea1.hap2.1 birds 2025560 GCA_964273705.1_rNatHel1.hap1.1 reptiles 2025560 GCA_964273795.1_rNatHel1.hap2.1 reptiles +69293 GCA_964276385.1_fGasAcu3.hap2.1 fish +69293 GCA_964276395.1_fGasAcu3.hap1.1 fish +37045 GCA_964289735.1_bPhaAeh10.maternal.1 birds +37045 GCA_964289755.1_bPhaAeh10.paternal.1 birds 30522 GCF_003369695.1_UOA_Brahman_1 mammals 9244 GCF_003957555.1_bCalAnn1_v1.p birds 59729 GCF_003957565.1_bTaeGut1_v1.p birds 59729 GCF_003957565.2_bTaeGut1.4.pri birds 2489341 GCF_004027225.2_bStrHab1.2.pri birds 9258 GCF_004115215.2_mOrnAna1.pri.v4 mammals 59479 GCF_004115265.1_mRhiFer1_v1.p mammals 59479 GCF_004115265.2_mRhiFer1_v1.p mammals 89673 GCF_004126475.1_mPhyDis1_v1.p mammals 89673 GCF_004126475.2_mPhyDis1.pri.v3 mammals 63155 GCF_007364275.1_fArcCen1 fish 1825980 GCF_007399415.2_rGopEvg1_v1.p reptiles 61383 GCF_007474595.1_mLynCan4_v1.p mammals 61383 GCF_007474595.2_mLynCan4.pri.v2 mammals 42100 GCF_008692025.1_mPhoSin1.pri mammals @@ -880,97 +891,102 @@ 202280 GCF_026419915.1_bHarHar1_primary_haplotype birds 27615 GCF_026419965.1_mKogBre1_haplotype_1 mammals 81927 GCF_026979565.1_bVidCha1_merged_haplotype birds 65483 GCF_027172205.1_rPodRaf1.pri reptiles 310915 GCF_027358585.1_fPanHyp1.pri fish 233779 GCF_027358695.1_aSpeBom1.2.pri amphibians 9470 GCF_027406575.1_mNycCou1.pri primates 110931 GCF_027409185.1_mCynVol1.pri mammals 13676 GCF_027409825.1_fScoJap1.pri fish 30427 GCF_027477595.1_bHaeMex1.pri birds 29078 GCF_027574615.1_DD_ASM_mEF_20220401 mammals 2857394 GCF_027579445.1_bAmmNel1.pri birds 443677 GCF_027579695.1_fNeoGra1.pri fish 8345 GCF_027579735.1_aBomBom1.pri amphibians 42254 GCF_027595985.1_mSorAra2.pri mammals +150705 GCF_027789765.1_aDenEbr1.pat amphibians 2857398 GCF_027887145.1_bAmmCau1.pri birds 2991368 GCF_027887155.1_rMalTer1.hap1 reptiles 13616 GCF_027887165.1_mMonDom1.pri mammals 82168 GCF_028017835.1_rEmyOrb1.hap1 reptiles 61452 GCF_028018385.1_mNeoNeb1.pri mammals 44398 GCF_028018845.1_bMelGeo1.pri birds 9764 GCF_028021215.1_mEscRob2.pri mammals 2746895 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