5fc81fc9aeef72ee718678ce93da39337b2db6fe markd Tue Dec 3 19:50:33 2024 -0800 fixed incorrectly saying LASTZ is a rename of BLASTZ, added missing LASTZ references diff --git src/hg/makeDb/trackDb/chainNet.html src/hg/makeDb/trackDb/chainNet.html index 1cb1b46..8b512d4 100644 --- src/hg/makeDb/trackDb/chainNet.html +++ src/hg/makeDb/trackDb/chainNet.html @@ -109,35 +109,34 @@ highest-scoring chains in the genome ranked first. The program chainNet was then used to place the chains one at a time, trimming them as necessary to fit into sections not already covered by a higher-scoring chain. During this process, a natural hierarchy emerged in which a chain that filled a gap in a higher-scoring chain was placed underneath that chain. The program netSyntenic was used to fill in information about the relationship between higher- and lower-level chains, such as whether a lower-level chain was syntenic or inverted relative to the higher-level chain. The program netClass was then used to fill in how much of the gaps and chains contained <em>N</em>s (sequencing gaps) in one or both species and how much was filled with transposons inserted before and after the two organisms diverged.</P> <H2>Credits</H2> <P> -Lastz (previously known as blastz) was developed at -<A HREF="http://www.bx.psu.edu/miller_lab/" -TARGET=_blank>Pennsylvania State University</A> by -Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from -Ross Hardison.</P> +LASTZ was developed at +<A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by +Bob Harris. +</P> <P> Lineage-specific repeats were identified by Arian Smit and his <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A> program.</P> <P> The axtChain program was developed at the University of California at Santa Cruz by Jim Kent with advice from Webb Miller and David Haussler.</P> <P> The browser display and database storage of the chains and nets were created by Robert Baertsch and Jim Kent.</P> <P> The chainNet, netSyntenic, and netClass programs were developed at the University of California Santa Cruz by Jim Kent.</P> <P>