0d573301aec0beac41da09b0152c5e74fbe7f2f2 markd Sun Dec 8 10:16:19 2024 -0800 Add generate name to output partation BEDs. Remove -partSize, which made no sense to just group by number of partations. It is replaced by -partMergeSize, to allow for merging partations within a certain distance diff --git src/hg/utils/bedPartition/tests/makefile src/hg/utils/bedPartition/tests/makefile index d153764..bffbb09 100644 --- src/hg/utils/bedPartition/tests/makefile +++ src/hg/utils/bedPartition/tests/makefile @@ -1,22 +1,22 @@ kentSrc = ../../../.. include ${kentSrc}/inc/common.mk BPART = ${DESTBINDIR}/bedPartition DIFF = diff test: test1 test2 test1: @${MKDIR} -p output ${BPART} -parallel=2 input/mrna1.bed output/$@.ranges.bed ${DIFF} expected/$@.ranges.bed output/$@.ranges.bed # merge partitions test2: @${MKDIR} -p output - ${BPART} -parallel=2 -partSize=2 input/mrna1.bed output/$@.ranges.bed + ${BPART} -parallel=2 -partMergeSize=10000 input/mrna1.bed output/$@.ranges.bed ${DIFF} expected/$@.ranges.bed output/$@.ranges.bed clean: rm -rf output