2e3c89f43f3bb9d386178270200d0acce9fc8050
lrnassar
  Fri Nov 22 17:47:13 2024 -0800
Giving the UI link cronjob some love by fixing all the 301 redirects. These are the bulk of the items listed on the cron. No RM.

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index 8ea2d04..a8b1ceb 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -337,31 +337,31 @@
 chromosomes chr22,
 color 30,130,210
 type genePred
 
 track hgIkmc
 shortLabel IKMC Genes Mapped
 longLabel International Knockout Mouse Consortium Genes Mapped to Human Genome
 group genes
 visibility hide
 type bed 12
 noScoreFilter .
 itemRgb on
 urlLabel KOMP Data Coordination Center:
 url http://www.mousephenotype.org/data/genes/$$
 mgiUrlLabel MGI Report:
-mgiUrl http://www.informatics.jax.org/marker/$$
+mgiUrl https://www.informatics.jax.org//marker/$$
 exonNumbers off
 
 track acembly
 shortLabel AceView Genes
 longLabel AceView Gene Models With Alt-Splicing
 group genes
 visibility hide
 color 155,0,125
 type genePred acemblyPep acemblyMrna
 autoTranslate 0
 url https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=human&l=$$
 itemClassTbl acemblyClass
 geneClasses main putative cDNA_supported
 gClass_main 128,0,125
 gClass_putative 200,0,125
@@ -2458,31 +2458,31 @@
     track kiddEichlerValidG248
     parent kiddEichlerValid
     shortLabel Validated  G248
     longLabel HGSV Individual G248 Validated Sites of Structural Variation
     priority 9
 
 track jaxQtlMapped
 compositeTrack on
 shortLabel MGI Mouse QTL
 longLabel MGI Mouse Quantitative Trait Loci Coarsely Mapped to $Organism
 group phenDis
 visibility hide
 type bed 4 .
 otherDb mm8
 otherDbTable jaxQtl
-url http://www.informatics.jax.org/marker/$$
+url https://www.informatics.jax.org//marker/$$
 urlLabel MGI QTL Detail:
 
     track jaxQtlAsIs
     parent jaxQtlMapped
     shortLabel MGI Mouse QTL
     longLabel MGI Mouse QTLs Coarsely Mapped to $Organism
     color 200,100,0
     priority 1
 
     track jaxQtlPadded
     parent jaxQtlMapped
     shortLabel MGI Mouse QTL Padded
     longLabel MGI Mouse QTL Peak-Score Markers Padded to 100k and Coarsely Mapped to $Organism
     color 200,100,0
     priority 2