2e3c89f43f3bb9d386178270200d0acce9fc8050 lrnassar Fri Nov 22 17:47:13 2024 -0800 Giving the UI link cronjob some love by fixing all the 301 redirects. These are the bulk of the items listed on the cron. No RM. diff --git src/hg/makeDb/trackDb/human/affy10K.html src/hg/makeDb/trackDb/human/affy10K.html index f847ee9..f82509d 100644 --- src/hg/makeDb/trackDb/human/affy10K.html +++ src/hg/makeDb/trackDb/human/affy10K.html @@ -1,51 +1,51 @@ <H2>Description</H2> <P>This track shows locations of the Single Nucleotide Polymorphisms on the Affymetrix 10K Mapping Array. The SNPs in this track include all of the markers from the array that have been successfully mapped against the current assembly.</P> <P>The SNPs were selected from public domain databases. Genotypes for these markers were generated at Affymetrix using GeneChip(r) DNA analysis technology and are available at their site.</P> <!-- <P>During sample preparation, an <B>enzyme</B> is used to fragment the genomic DNA into smaller pieces. The restriction endonucleases <I><B>HindIII</B></I> and <I><B>XbaI</B></I> have been used to generate this data.</P> <P>Genotypes are reported as pairs of basecalls representing the two observed alleles. Individual genotypes for which no call was made are labeled 'NC'. A minimum of 46 genotype calls in the set of 54 individuals are included for each SNP.</P> <P><B>Allele Frequency</B> for the 'A' allele is two times the number of 'AA' calls plus the number of 'AB' calls, divided by two times the total number of calls. Allele Frequency for the 'B' allele is two times the number of 'BB' calls plus the number of 'AB' calls, divided by two times the total number of calls. The <B>Minimum Allele Frequency</B> is the lesser of these two values. <B>Heterozygosity</B> is two times the product of the two allele frequencies.</P> --> <H2>Credits</H2> <P>Thanks to <A HREF="https://www.ncbi.nlm.nih.gov/SNP" TARGET=_blank>dbSnp</A> at the NCBI for providing the public SNPs. <P>Thanks to <A HREF="http://www.affymetrix.com" TARGET=_blank>Affymetrix, Inc.</A> for developing the genotyping array. For more details on this genotyping assay, please see the supplemental information on the <A HREF="http://www.affymetrix.com/support/technical/byproduct.affx?product=10k" TARGET=_blank>Affymetrix 10K SNP</A> product.</P> <H2>Terms of Use</H2> -<P>Please see the <A HREF="http://www.affymetrix.com/site/terms.affx" +<P>Please see the <A HREF="https://www.affymetrix.com:443/site/terms.affx" TARGET=_blank>Terms and Conditions</A> for the use of this data at the <A HREF="http://www.affymetrix.com" TARGET=_blank>Affymetrix, Inc.</A> site.</P>