2e3c89f43f3bb9d386178270200d0acce9fc8050
lrnassar
  Fri Nov 22 17:47:13 2024 -0800
Giving the UI link cronjob some love by fixing all the 301 redirects. These are the bulk of the items listed on the cron. No RM.

diff --git src/hg/makeDb/trackDb/mouse/stsMapMouseNew.html src/hg/makeDb/trackDb/mouse/stsMapMouseNew.html
index 1149e74..809cf86 100644
--- src/hg/makeDb/trackDb/mouse/stsMapMouseNew.html
+++ src/hg/makeDb/trackDb/mouse/stsMapMouseNew.html
@@ -1,53 +1,53 @@
 <H2>Description</H2>
 <P>This track shows locations of Sequence Tagged Sites (STS) 
 along the mouse draft assembly.  These markers have been mapped using 
 either genetic mapping (<A href="https://www.broadinstitute.org/science/projects/mammals-models/mouse/old-mouse-genome-data"
-TARGET=_blank>WICGR Mouse Genetic Map</A>, <A href="http://www.informatics.jax.org/"
+TARGET=_blank>WICGR Mouse Genetic Map</A>, <A href="https://www.informatics.jax.org//"
 TARGET=_blank>MGD Genetic Map</A>) or radiation hybridization mapping
 (<A href="https://www.broadinstitute.org/mouse_rh/index.html" 
 TARGET=_blank>Whitehead/MRC RH Map</A>) techniques.</p>  
 
 Additional data on the individual maps can be found at the following links:
 <UL>
 <LI>NCBI UniSTS
-<LI><A href="http://www.informatics.jax.org" TARGET=_blank> Mouse Genome Informatics (MGI)</A>
+<LI><A href="https://www.informatics.jax.org/" TARGET=_blank> Mouse Genome Informatics (MGI)</A>
 </UL>
 
 <P>By default all genetic map markers are shown as blue; only radiation 
 hybrid markers and markers that are neither genetic nor radiation hybrid 
 are shown as black; markers that map to more than one position are 
 shown in lighter colors. Users  can choose a color to highlight a subset 
 of markers of interest from the Filter options in STS Markers 
 Track Setting page.
 
 <H2>Methods</H2>
 <P>Positions of STS markers are determined using both full sequences
 and primer information.  Full sequences are aligned using <A
 HREF="https://genome.cshlp.org/content/12/4/656.full" TARGET=_blank>blat</A>,
 while <A
 HREF="https://www.ncbi.nlm.nih.gov/sutils/e-pcr/"
 TARGET = _BLANK">ePCR</A> is used to find locations using primer information.
 
 <H2>Using the Filter</H2>
 <P>The track filter can be used to change the color or include/exclude
 a set of map data within the track. This is helpful when many items
 are shown in the track display, especially when only some are relevant
 to the current task. To use the filter:
 <UL>
 <LI>In the pulldown menu, select the map whose data you would like to
 highlight or exclude in the display. By default, the &quot;All
 Genetic&quot; option is selected.
 <LI>Choose the color or display characteristic that will be used to
 highlight or include/exclude the filtered items. If
 &quot;exclude&quot; is chosen, the browser will not display data from
 the map selected in the pulldown list. If &quot;include&quot; is
 selected, the browser will display only data from the selected map.
 </UL></P>
 <P>When you have finished configuring the filter, click the
 <em>Submit</em> button.</P>
 
 <H2>Credits</H2>
 <P> This track was designed and implemented by Terry Furey and Yontao Lu. Many thanks to
 <A HREF="https://www.broadinstitute.org/" TARGET=_blank>Whitehead Institute (Broad Institute)</A>
  and <A HREF="https://www.jax.org/" TARGET=_blank>Jackson Lab</A> for 
 contributing the data.