7c0bb45884523d1077f0fab859f0ef2637776e8e hiram Fri Nov 29 09:00:44 2024 -0800 VGP update sent some to legacy refs #34370 diff --git src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt index 983bedf..7807e44 100644 --- src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt +++ src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt @@ -225,58 +225,60 @@ GCA_023634155.1_bFalPer1.pri birds GCA_023638135.1_bFalBia1.pri birds GCA_025091365.1_ASM2509136v1 invertebrate GCA_025265405.1_mMesDen1_primary_haplotype mammals GCA_025583915.1_AnoSag2.1 vertebrate GCA_026419915.1_bHarHar1_primary_haplotype birds GCA_026419965.1_mKogBre1_haplotype_1 mammals GCA_027172205.1_rPodRaf1.pri vertebrate GCA_027358585.1_fPanHyp1.pri fish GCA_027406575.1_mNycCou1.pri mammals GCA_027409825.1_fScoJap1.pri fish GCA_027477595.1_bHaeMex1.pri birds GCA_027579445.1_bAmmNel1.pri birds GCA_027579695.1_fNeoGra1.pri fish GCA_027579735.1_aBomBom1.pri vertebrate +GCA_027789765.1_aDenEbr1.pat vertebrate GCA_027887145.1_bAmmCau1.pri birds GCA_027887155.1_rMalTer1.hap1 vertebrate GCA_027887165.1_mMonDom1.pri mammals GCA_028018385.1_mNeoNeb1.pri mammals GCA_028018845.1_bMelGeo1.pri birds GCA_028023285.1_mBalRic1.hap2 mammals GCA_028389875.1_bPtePen1.pri birds GCA_028390025.1_aPseCor3.hap2 vertebrate GCA_028500815.1_bRisTri1.patW.cur.20221130 birds GCA_028564815.1_mEubGla1.hap2 mammals GCA_028858705.1_bGruAme1.mat birds GCA_028858805.1_NHGRI_mPanTro3-v1.1-hic.freeze_alt primates GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri primates GCA_028885525.1_NHGRI_mPonPyg2-v1.1-hic.freeze_alt primates GCA_029207755.1_bChaFas1.0.hap1 birds GCA_029499605.1_aHylSar1.hap1 vertebrate GCA_029633855.1_fHopMal1.hap1 fish GCA_029633865.1_fLamInc1.hap2 fish GCA_030028045.1_mHipAmp2.hap2 mammals GCA_030144855.1_sHypSab1.hap1 vertebrate GCA_030435805.1_mMusLut2.pri mammals GCA_030684315.1_sSteTig4.hap1 vertebrate GCA_030867065.1_rAllMis1 vertebrate GCA_030867095.1_rAllMis1 vertebrate GCA_030936135.1_bGavSte3.hap2 birds GCA_035083965.1_klBraLanc5.hap2 invertebrate GCA_036850765.1_mSacBil1_pri_phased_curated mammals GCA_036850995.1_mSacLep1_pri_phased_curated mammals +GCA_036971445.1_sNarBan1.hap1 vertebrate GCA_038363095.1_mArtLit.hap1 mammals GCA_900006655.3_Susie3 primates GCA_900094665.2_CAROLI_EIJ_v1.1 mammals GCA_900324465.2_fAnaTes1.2 fish GCA_900634415.1_fCotGob3.1 fish GCA_900634775.1_fGouWil2.1 fish GCA_901343595.1_MONAX5 mammals GCA_901699155.1_bStrTur1.1 birds GCA_901699165.1_bStrTur1.1_alternate_haplotype birds GCA_901709675.1_fSynAcu1.1 fish GCA_902153765.1_bAquChr1.2_alternate_haplotype birds GCA_902459505.1_aGeoSer1.1 vertebrate GCA_902500255.1_fThaAma1.1 fish GCA_902686455.1_mSciVul1.1 mammals GCA_902713425.2_fAciRut3.2_maternal_haplotype fish @@ -286,30 +288,31 @@ GCA_905147365.1_ilAriAges1.1 invertebrate GCA_905147765.2_ilVanAtal1.2 invertebrate GCA_905147795.1_ilPieRapa1.1 invertebrate GCA_905163445.1_ilParAegt1.1 invertebrate GCA_905220365.1_ilVanCard2.1 invertebrate GCA_905220415.1_ilColCroc2.1 invertebrate GCA_905220565.1_ilMelCinx1.1 invertebrate GCA_905237065.2_Ssal_v3.1 fish GCA_905333055.1_ilManJurt1.1 invertebrate GCA_905404315.1_ilLepSina1.1 invertebrate GCA_905475465.1_ilPieNapi1.1 invertebrate GCA_910591565.1_ilCydSple1.1 invertebrate GCA_910596095.1_fThuMac1.1 fish GCA_947179515.1_mApoSyl1.1 mammals GCA_947347685.1_fPlePla1.1 fish +GCA_947461875.1_bHalAlb1.1 birds GCA_949774975.1_mLagAlb1.1 mammals GCA_949987515.1_mDelDel1.1 mammals GCA_949987535.1_mBalAcu1.1 mammals GCA_950005125.1_mChiNiv1.1 mammals GCA_950295315.1_mEriEur2.1 mammals GCA_958295425.1_fSolSol10.1 fish GCA_963082965.1_fCarCar2.1 fish GCA_963259705.1_mMyoDau2.1 mammals GCA_963514075.1_fConCon1.1 fish GCF_000001405.39_GRCh38.p13 primates GCF_000001405.40_GRCh38.p14 primates GCF_000001635.26_GRCm38.p6 mammals GCF_000001735.3_TAIR10 plants GCF_000002435.1_GL2 invertebrate GCF_000002595.1_v3.0 plants