9cd7cc7903e81265cfb09acd173ca9e385c05d06 hiram Tue Nov 26 12:32:02 2024 -0800 VGP update refs #34370 diff --git src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt index 703bee0..89a3118 100644 --- src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt +++ src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt @@ -78,30 +78,31 @@ 386614 GCA_010909745.1_sAmbRad1.alt sharks 386614 GCA_010909765.1_sAmbRad1.pri sharks 7757 GCA_010993595.1_kPetMar1.alt otherChordates 8010 GCA_011004835.1_fEsoLuc1.alt fish 8010 GCA_011004845.1_fEsoLuc1.pri fish 100784 GCA_011004865.1_bBalReg1.alt birds 100784 GCA_011004875.1_bBalReg1.pri birds 9483 GCA_011078405.1_mCalJac1.mat primates 9483 GCA_011100535.1_mCalJac1.pat primates 9483 GCA_011100535.2_mCalJac1.2.pat primates 9483 GCA_011100555.1_mCalJac1.pat.X primates 9337 GCA_011100635.1_mTriVul1.pri mammals 9337 GCA_011100645.1_mTriVul1.alt mammals 61156 GCA_011750645.1_mArvNil1.mat mammals 61156 GCA_011762505.1_mArvNil1.pat.X mammals +61156 GCA_011762505.2_mArvNil1.pat.X mammals 9739 GCA_011762515.1_mTurTru1.pat mammals 9739 GCA_011762535.1_mTurTru1.mat mammals 61156 GCA_011762545.1_mArvNil1.pat mammals 9739 GCA_011762595.1_mTurTru1.mat.Y mammals 13146 GCA_012275265.1_bMelUnd1.mat birds 13146 GCA_012275275.1_bMelUnd1.pat birds 13146 GCA_012275295.1_bMelUnd1.mat.Z birds 882753 GCA_013347815.1_fAntMac1.alt fish 8005 GCA_013347915.1_fEleEle1.alt fish 882753 GCA_013358685.1_fAntMac1.pri fish 118141 GCA_013368575.1_fMegCyp1.alt fish 48427 GCA_013368595.1_bNycGra1.alt birds 48427 GCA_013368605.1_bNycGra1.pri birds 59479 GCA_014108255.1_mRhiFer1.p mammals 2767082 GCA_014706295.1_ASM1470629v1 birds @@ -424,63 +425,70 @@ 38937 GCA_037176765.1_rAnoSag1.mat reptiles 38937 GCA_037176775.1_rAnoSag1.pat reptiles 43566 GCA_037306005.1_aRhiDor1.hap1 amphibians 43566 GCA_037306015.1_aRhiDor1.hap2 amphibians 92651 GCA_037893015.1_bilby.v1.9.chrom.fasta mammals 43583 GCA_037950955.1_bSarPap1.hap2 birds 43583 GCA_037962945.1_bSarPap1.hap1 birds 28792 GCA_038021265.1_fCypVen1.hap1 fish 28792 GCA_038024135.1_fCypVen1.hap2 fish 3061075 GCA_038048845.1_aMixFle1.hap1 amphibians 3061075 GCA_038048865.1_aMixFle1.hap2 amphibians 8014 GCA_038355195.1_fOsmMor3.pri fish 27634 GCA_038363095.1_mArtLit.hap1 mammals 27634 GCA_038363095.2_mArtLit.hap1 mammals 51014 GCA_038363145.1_mArtInt1.hap1 mammals +27634 GCA_038363175.2_mArtLit1.hap2 mammals 51014 GCA_038363225.1_mArtInt1.hap2 mammals 288555 GCA_038501915.1_aXenPet1.maternal.cur amphibians 288555 GCA_038501925.1_aXenPet1.paternal.cur amphibians 2994998 GCA_039655065.1_mGloMut1.hap1 mammals 2994998 GCA_039656995.1_mGloMut1.hap2 mammals 151761 GCA_039720425.1_bAmaOch1.hap2 birds 151761 GCA_039720435.1_bAmaOch1.hap1 birds 109706 GCA_039877575.1_fChaTrf1.hap2 fish 109706 GCA_039877785.1_fChaTrf1.hap1 fish 46218 GCA_039878515.1_bCotChi1.hap1 birds 46218 GCA_039878825.1_bCotChi1.hap2 birds 2997257 GCA_039880925.1_mMolNig1.hap2 mammals 2997257 GCA_039880945.1_mMolNig1.hap1 mammals 48277 GCA_039906465.1_bAegAlb1.hap2 birds 82174 GCA_039906515.1_mPseCra1.hap1 mammals 82174 GCA_039906525.1_mPseCra1.hap2 mammals 48277 GCA_039906565.1_bAegAlb1.hap1 birds 8439 GCA_040206675.1_aAscTru1.hap2 amphibians 8439 GCA_040206685.1_aAscTru1.hap1 amphibians 8801 GCA_040807015.1_bStrCam1.hap2 birds 76066 GCA_040894005.1_aEngPut4.maternal amphibians 76066 GCA_040894015.1_aEngPut4.paternal amphibians 1041117 GCA_040894355.1_rMyuGeo1.pri.20230808 reptiles 752182 GCA_040937895.1_aHypRig1.alt amphibians +8296 GCA_040938575.1_UKY_AmexF1_1 amphibians +7888 GCA_040939525.1_ASM4093952v1 fish 3154068 GCA_040954595.1_ASM4095459v1 invertebrate 3154068 GCA_040954625.1_ASM4095462v1 invertebrate 7918 GCA_040954845.1_fLepOcu1.hap1 fish 9622 GCA_040955645.1_LycPic1.final.hap1 mammals 9622 GCA_040955705.1_LycPic1.final.hap2 mammals 9773 GCA_041834305.1_ASM4183430v1 mammals 3127111 GCA_042242105.1_fPemKlu1.hap1 fish 3127111 GCA_042242125.1_fPemKlu1.hap2 fish +9545 GCA_043159975.1_mMacNem.hap1 mammals +9545 GCA_043161795.1_mMacNem.hap2 mammals 394691 GCA_043250625.1_fSebFas1.pri fish +320637 GCA_043290065.1_mRhyPet1.hap2 mammals +320637 GCA_043290085.1_mRhyPet1.hap1 mammals 8154 GCA_900246225.5_fAstCal1.3 fish 64144 GCA_900324465.2_fAnaTes1.2 fish 64144 GCA_900324465.3_fAnaTes1.3 fish 205130 GCA_900324485.3_fMasArm1.3 fish 56716 GCA_900634415.1_fCotGob3.1 fish 56716 GCA_900634435.1_fCotGob3.1_alternate_haplotype fish 210632 GCA_900634625.2_fParRan2.2 fish 441366 GCA_900634775.1_fGouWil2.1 fish 441366 GCA_900634775.2_fGouWil2.2 fish 64144 GCA_900650485.1_fAnaTes1.2_alternate_haplotype fish 441366 GCA_900650505.1_fGouWil2.1_alternate_haplotype fish 210632 GCA_900651595.1_fParRan2.1_alternate_haplotype fish 158456 GCA_900651605.1_fBetSpl5.1_alternate_haplotype fish 158456 GCA_900651605.2_fBetSpl5.4_alternate_haplotype fish 299321 GCA_900700345.2_fDenClu1.1_alternate_haplotype fish @@ -718,39 +726,44 @@ 8839 GCA_964188335.1_bAnaPla2.hap2.1 birds 8839 GCA_964188345.1_bAnaPla2.hap1.1 birds 30397 GCA_964188355.1_bButBut1.hap1.1 birds 64176 GCA_964188365.1_rPodMur119.hap2.1 reptiles 30397 GCA_964188375.1_bButBut1.hap2.1 birds 65484 GCA_964188395.1_rPodSic1.hap2.1 reptiles 1091426 GCA_964188405.1_fProPar1.1 fish 1091426 GCA_964188415.1_fProPar1.1_alternate_haplotype fish 9997 GCA_964194105.1_mSpeCit3.1 mammals 9375 GCA_964194135.1_mTalEur1.hap1.1 mammals 57982 GCA_964194155.1_sCetMax3.hap1.1 sharks 57982 GCA_964194165.1_sCetMax3.hap2.1 sharks 77218 GCA_964194185.1_mRhiHip2.hap1.1 mammals 9375 GCA_964194205.1_mTalEur1.hap2.1 mammals 77218 GCA_964194215.1_mRhiHip2.hap2.1 mammals +31155 GCA_964194405.1_rVipBer3.hap2.1 reptiles +31155 GCA_964194415.1_rVipBer3.hap1.1 reptiles 1323832 GCA_964195595.1_bCalBor7.hap1.1 birds 109479 GCA_964195625.1_mMyoMys1.hap2.1 mammals 1323832 GCA_964196065.1_bCalBor7.hap2.1 birds 58319 GCA_964197995.1_fScaEry2.hap1.1 fish 7748 GCA_964198595.1_kcLamFluv1.1 otherChordates 119627 GCA_964199725.1_bLarMic1.1_alternate_haplotype birds +119627 GCA_964199755.1_bLarMic1.1 birds 7725 GCA_964204865.1_kaStyClav1.hap1.1 otherChordates 7725 GCA_964204955.1_kaStyClav1.hap2.1 otherChordates +8348 GCA_964205295.1_aBomVar4.maternal.1 amphibians 8348 GCA_964205305.1_aBomVar4.paternal.1 amphibians +8843 GCA_964211785.1_bAnsAns1.hap2.1 birds 219593 GCA_964211795.1_bAytFer1.hap2.1 birds 219593 GCA_964211825.1_bAytFer1.hap1.1 birds 8843 GCA_964211835.1_bAnsAns1.hap1.1 birds 109481 GCA_964212025.1_mMyoNat1.hap2.1 mammals 109481 GCA_964212035.1_mMyoNat1.hap1.1 mammals 112232 GCA_964213995.1_sMusAst1.hap1.1 sharks 112232 GCA_964214025.1_sMusAst1.hap2.1 sharks 65482 GCA_964234715.1_rPodMel1.hap1.1 reptiles 65482 GCA_964234825.1_rPodMel1.hap2.1 reptiles 9123 GCA_964237395.1_bGalChl1.hap2.1 birds 9986 GCA_964237555.1_mOryCun1.1 mammals 9123 GCA_964237585.1_bGalChl1.hap1.1 birds 140042 GCA_964251985.1_rPodErh1.hap2.1 reptiles 140042 GCA_964252035.1_rPodErh1.hap1.1 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