b0c17e134726b4a4111fef680ae14c563220f998 gperez2 Tue Jan 7 20:56:04 2025 -0800 Code review edits for the NCBI Gene Orthologs track description, refs #35020 diff --git src/hg/makeDb/trackDb/refSeqComposite.html src/hg/makeDb/trackDb/refSeqComposite.html index 60628fc..4679c0a 100644 --- src/hg/makeDb/trackDb/refSeqComposite.html +++ src/hg/makeDb/trackDb/refSeqComposite.html @@ -74,32 +74,39 @@ RefSeq HGMD (subset) – Subset of RefSeq Curated, transcripts annotated by the Human Gene Mutation Database. This track is only available on the human genomes hg19 and hg38. It is the most restricted RefSeq subset, targeting clinical diagnostics.
  • NCBI Orthologs – Orthologous genes were identified by NCBI's Eukaryotic Genome Annotation Pipeline for the NCBI Gene dataset using a combination of protein sequence similarity and local synteny analysis. Orthology is determined between the genome being annotated and a reference genome, such as human or zebrafish, and pairs of orthologs are grouped together. Transitive relationships are inferred within each group, for example, zebrafish <-> human <-> mouse. For more information on how NCBI calculates orthologs, see the details provided - here. This track is available for the following assemblies: hg38, mm39, danRer11, canFam6, - and bosTau9. + here. This track is available for the following assemblies: + hg38, + mm39, + danRer11, + canFam6, and + bosTau9.

    • The RefSeq All, RefSeq Curated, RefSeq Predicted, and UCSC RefSeq tracks follow the display conventions for gene prediction tracks. The color shading indicates the level of review the RefSeq record has undergone: predicted (light), provisional (medium), or reviewed (dark), as defined by RefSeq.