a919a3dbe5fd770f03b4c879612b123e04743a9c
gperez2
  Thu Dec 12 23:47:12 2024 -0800
Adding the Gene Orthologs track to the NCBI RefSeq composite track, refs #30262

diff --git src/hg/makeDb/trackDb/mouse/refSeqComposite.mm10.mm39.ra src/hg/makeDb/trackDb/mouse/refSeqComposite.mm10.mm39.ra
index 31e0455..09b02ab 100644
--- src/hg/makeDb/trackDb/mouse/refSeqComposite.mm10.mm39.ra
+++ src/hg/makeDb/trackDb/mouse/refSeqComposite.mm10.mm39.ra
@@ -111,30 +111,45 @@
         baseColorUseCds given
         baseColorDefault genomicCodons
 
         track ncbiRefSeqSelect
         parent refSeqComposite off
         priority 8
         type genePred
         shortLabel RefSeq Select
         longLabel NCBI RefSeq Select: One representative transcript per protein-coding gene
         trackHandler ncbiRefSeq
         idXref ncbiRefSeqLink mrnaAcc name
         color 20,20,160
         baseColorUseCds given
         baseColorDefault genomicCodons
 
+        track ncbiOrtho
+        parent refSeqComposite off
+        shortLabel NCBI Orthologs
+        longLabel NCBI Gene Orthologs
+        type bigBed 9 +
+        bigDataUrl /gbdb/$D/ncbiOrtho/ncbiOrtho.bb
+        visibility hide
+        labelFields hugo,name
+        searchIndex hugo,name
+        searchTrix /gbdb/$D/ncbiOrtho/ncbiOrtho.ix
+        defaultLabelFields hugo
+        color 136,0,204
+        priority 9
+        mouseOver $url
+
 searchName ncbiRefSeqCuratedName2
 searchTable ncbiRefSeqCurated
 searchMethod prefix
 query select chrom, txStart,txEnd, name from %s where name2 like '%s%%'
 searchPriority 1.07200
 
 searchName ncbiRefSeqPredictedName2
 searchTable ncbiRefSeqPredicted
 searchMethod prefix
 query select chrom, txStart,txEnd, name from %s where name2 like '%s%%'
 searchPriority 1.07201
 
 searchName ncbiRefSeqCuratedProtAcc
 searchTable ncbiRefSeqCurated
 searchType genePred
@@ -192,15 +207,20 @@
 semiShortCircuit 1
 termRegex X[MR]_[0-9]{6}[0-9]*\.[0-9]+
 searchPriority 2.07204
 
 searchName ncbiRefSeqPredictedNoVersion
 searchTable ncbiRefSeqPredicted
 query select chrom,txStart,txEnd,name from %s where name like '%s.%%'
 semiShortCircuit 1
 termRegex X[MR]_[0-9]{6}[0-9]*
 dontCheck X[MR]_[0-9]{6}[0-9]*\.[0-9]+
 searchPriority 2.07204
 
 searchTable ncbiRefSeqOther
 searchPriority 2.07207
 searchType bigBed
+
+searchName ncbiOrtho
+searchTable ncbiOrtho
+searchType bigBed
+searchPriority 21