Commits for hiram

v475_base to v476_preview (2024-12-09 to 2024-12-16) v476

0104796f18e0ee85ccaa6f76caeacb055a42bc6c Mon Dec 9 12:09:08 2024 -0800

• keep dynaBlat/backUpLinks hierarchy up to date refs #33526
  • src/hg/makeDb/doc/asmHubs/mkSymLinks.pl - lines changed 17, context: html, text, full: html, text

7580b50c5626bfbd3d6f90c7fb45dd899e335c64 Mon Dec 9 13:00:46 2024 -0800

• now staging everything on /gbdb/genark/ some redmine reference
  • src/hg/makeDb/doc/asmHubs/mkSymLinks.pl - lines changed 57, context: html, text, full: html, text

0f2d61eb03ad97b5b8f151317f3b065733a891ff Wed Dec 11 10:16:10 2024 -0800

• adding one per user request refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv - lines changed 1, context: html, text, full: html, text

366ce67b8b7f69df2eaab2db4747f1437842f6fb Thu Dec 12 11:04:37 2024 -0800

• update common names refs #34370
  • src/hg/makeDb/doc/vgpAsmHub/vgp.alternate.orderList.tsv - lines changed 70, context: html, text, full: html, text
  • src/hg/makeDb/doc/vgpAsmHub/vgp.primary.orderList.tsv - lines changed 138, context: html, text, full: html, text

a1790e2b1d8c1d197bb1348554322a783a9b2adf Thu Dec 12 13:49:09 2024 -0800

• this process really wants to be on /dev/shm/ before /scratch/tmp/ refs #34370
  • src/hg/utils/automation/doRepeatModeler.pl - lines changed 4, context: html, text, full: html, text