b63002965b8608c38af0c85ede421e7e79bd8d0d jnavarr5 Wed Dec 11 11:53:28 2024 -0800 Announcing the DDG2P track, refs #34097 diff --git src/hg/makeDb/trackDb/human/decipher.alpha.ra src/hg/makeDb/trackDb/human/decipher.alpha.ra index ca10ce1..f37588e 100644 --- src/hg/makeDb/trackDb/human/decipher.alpha.ra +++ src/hg/makeDb/trackDb/human/decipher.alpha.ra @@ -1,71 +1,73 @@ track decipherContainer superTrack on shortLabel DECIPHER longLabel DECIPHER cartVersion 7 group phenDis +pennantIcon New red ../goldenPath/newsarch.html#121024 "DDG2P released December 10, 2024" track decipher shortLabel DECIPHER CNVs longLabel DECIPHER CNVs group phenDis visibility pack type bigBed 9 + itemRgb on tableBrowser off knownCanonToDecipher knownToDecipher decipherRaw bigDataUrl /gbdb/$D/decipher/decipherCnv.bb url https://www.deciphergenomics.org/patient/$$ urlLabel Decipher Patient View: filter.size 0 filterByRange.size on filterLimits.size 2:170487333 filterValues.variant_class Amplification,Copy-Number Gain,Deletion,Duplication,Duplication/Trip filterValues.pathogenicity Benign,Likely Benign,Likely Pathogenic,Pathogenic,Uncertain,Unknown mergeSpannedItems on searchIndex name mouseOverField _mouseOvera - html decipherContainer.html + html decipherContainer parent decipherContainer track decipherSnvs shortLabel DECIPHER SNVs longLabel DECIPHER: Chromosomal Imbalance and Phenotype in Humans (SNVs) group phenDis visibility pack color 0,0,0 type bed 4 tableBrowser off decipherSnvsRaw prevExonText Left edge nextExonText Right edge - html decipherContainer.html + html decipherContainer parent decipherContainer track decipherDDG2P parent decipherContainer type bigBed 9 + shortLabel DECIPHER DDG2P longLabel DECIPHER: Developmental Disorders panel in the Gene2Phenotype database (DDG2P) bigDataUrl /gbdb/$D/decipher/ddg2pSyndromes.bb group phenDis visibility pack mouseOver <b>Position</b>: $chrom:${chromStart}-${chromEnd}<br> <b>Type of CNV</b>: $type<br> <b>Frequency of CNV</b>: $frequency<br> <b>Number of Observations</b>: $observations<br> <b>Sample Size of Study</b>: $sample_size<br> - html decipherContainer.html + html decipherContainer searchIndex name noScoreFilter on filterValues.type loss,gain,del/dup filter.sample_size 0 + pennantIcon New red ../goldenPath/newsarch.html#121024 "Released December 10, 2024" searchTable decipher searchMethod exact searchType bigBed searchTable decipherDDG2P searchMethod exact searchType bigBed searchName decipherId searchTable decipher termRegex [0-9]+ searchType bed searchPriority 50