9d56da4ed4b38921527ecb425c79f7f809408345
lrnassar
  Fri Dec 13 14:08:41 2024 -0800
Adding colors to the REVEL and CADD tracks, refs #34732

diff --git src/hg/makeDb/doc/hg38/cadd.txt src/hg/makeDb/doc/hg38/cadd.txt
index c5c4765..15e8a4f 100644
--- src/hg/makeDb/doc/hg38/cadd.txt
+++ src/hg/makeDb/doc/hg38/cadd.txt
@@ -21,15 +21,18 @@
 mkdir -p /hive/data/genomes/{hg19,hg38}/bed/cadd/v1.7
 cd /hive/data/genomes/hg38/bed/cadd/v1.7
 aria2c -x4 -c https://kircherlab.bihealth.org/download/CADD/v1.7/GRCh38/whole_genome_SNVs.tsv.gz
 aria2c -x4 -c https://kircherlab.bihealth.org/download/CADD/v1.7/GRCh38/gnomad.genomes.r4.0.indel.tsv.gz
 python ~/kent/src/hg/makeDb/cadd/caddToWig.py whole_genome_SNVs.tsv.gz
 python ~/kent/src/hg/makeDb/cadd/caddToWig.py
 python ~/kent/src/hg/makeDb/cadd/caddToBed.py gnomad.genomes.r4.0.indel.tsv.gz
 bedSort del.bed del.bed
 bedSort ins.bed ins.bed
 bedToBigBed del.bed ../../../chrom.sizes del.bb -type=bed9+ -tab -as=${HOME}/kent/src/hg/makeDb/cadd/cadd.as &
 bedToBigBed ins.bed ../../../chrom.sizes ins.bb -type=bed9+ -tab -as=${HOME}/kent/src/hg/makeDb/cadd/cadd.as &
 wigToBigWig a.wig ../../../chrom.sizes a.bw &
 wigToBigWig c.wig ../../../chrom.sizes c.bw &
 wigToBigWig g.wig ../../../chrom.sizes g.bw &
 wigToBigWig t.wig ../../../chrom.sizes t.bw &
+
+#Colors were added using the script
+~/kent/src/hg/makeDb/scripts/wigColorByColors/makeWigColorByRevelCadd.py