9d56da4ed4b38921527ecb425c79f7f809408345 lrnassar Fri Dec 13 14:08:41 2024 -0800 Adding colors to the REVEL and CADD tracks, refs #34732 diff --git src/hg/makeDb/doc/hg38/revel.txt src/hg/makeDb/doc/hg38/revel.txt index 131870a..8f2b149 100644 --- src/hg/makeDb/doc/hg38/revel.txt +++ src/hg/makeDb/doc/hg38/revel.txt @@ -1,11 +1,14 @@ cd /hive/data/genomes/hg38/bed/revel wget https://rothsj06.u.hpc.mssm.edu/revel-v1.3_all_chromosomes.zip unzip revel-v1.3_all_chromosomes.zip time python ~/kent/src/hg/makeDb/revel/revelToWig.py ../../chrom.sizes revel_with_transcript_ids hg38 wigToBigWig a.wig ../../chrom.sizes a.bw & wigToBigWig t.wig ../../chrom.sizes t.bw & wigToBigWig c.wig ../../chrom.sizes c.bw & wigToBigWig g.wig ../../chrom.sizes g.bw & bedSort overlap.bed overlap.bed bedToBigBed overlap.bed -as=~/kent/src/hg/makeDb/revel/revel.as ../../../chrom.sizes overlap.bb -tab -type=bed8+ rm *.wig -f + +#Colors were added using the script +~/kent/src/hg/makeDb/scripts/wigColorByColors/makeWigColorByRevelCadd.py