01859939a397ed998e752ad25c54cdd22742a49c
angie
  Fri Dec 20 15:00:05 2024 -0800
Lots of additions for H5N1 outbreak work.
* Add Andersen Lab's assemblies of USDA SRA data from 2024 H5N1 outbreak
* Add Bloom Lab metadata from Deep Mutational Scanning (DMS) experiments on H5N1 HA (referenced to American Wigeon 2021 vaccine strain) and PB2
* Add build of concatenated segments from the 2024 H5N1 outbreak
* Better handling of serotype and segment in INSDC metadata

diff --git src/hg/utils/otto/fluA/pb2.config.json src/hg/utils/otto/fluA/pb2.config.json
new file mode 100644
index 0000000..4ea36cb
--- /dev/null
+++ src/hg/utils/otto/fluA/pb2.config.json
@@ -0,0 +1,15 @@
+{ "colorRamps": {
+    "meta_mutdiffsel": { "scale": [ [0, "#D8D8D8"], [4.872, "#5050F8"] ] }
+  },
+  "customNames": {
+    "meta_mutdiffsel": "Differential selection in human vs. avian cells",
+    "meta_mutdiffsel_mutations": "Differential selection mutations"
+  },
+  "colorBy": {
+      "colorByOptions": [ "meta_host", "meta_country", "meta_location",
+                          "meta_serotype", "meta_segment",
+                          "meta_mutdiffsel",
+                          "genotype",
+                          "None" ]
+  }
+}