9bbe6deba02704509cb2d7314cb13e83a34b4884
angie
  Fri Dec 20 15:18:38 2024 -0800
Exclude sequences that caused weird branch and/or lineage assignment trouble.

diff --git src/hg/utils/otto/rsv/exclude.ids src/hg/utils/otto/rsv/exclude.ids
index 9bf6a5f..11180bc 100644
--- src/hg/utils/otto/rsv/exclude.ids
+++ src/hg/utils/otto/rsv/exclude.ids
@@ -17,15 +17,97 @@
 # These mess up the RSV-A tree, adding long jagged branches to GA.2 and GA.3.0.[1-4]
 GU591758.1
 GU591759.1
 GU591760.1
 GU591761.1
 GU591762.1
 GU591763.1
 GU591764.1
 GU591765.1
 GU591766.1
 GU591767.1
 GU591768.1
 GU591769.1
 GU591770.1
 GU591771.1
+# Crazy number of private mutations:
+OQ941660.1
+OQ941663.1
+OQ941666.1
+OQ941670.1
+OQ941671.1
+OQ941672.1
+OQ941683.1
+OQ941684.1
+OQ941695.1
+OQ941701.1
+OQ941709.1
+OQ941740.1
+OQ941742.1
+OQ941747.1
+OQ941755.1
+OQ941772.1
+OQ941773.1
+OQ941775.1
+KJ627347.1
+KJ627363.1
+OR287996.1
+OR287972.1
+OQ261749.1
+MN108245.1
+MN108247.1
+KY924878.1
+OR496366.1
+OR496367.1
+MN125678.1
+LC474548.1
+# All from same country/upload, cause split lineage to be unannotatable
+PP151392.1
+PP151361.1
+PP151360.1
+PP151367.1
+PP151359.1
+PP151358.1
+PP151393.1
+PP151342.1
+PP151350.1
+PP151350.1
+PP151364.1
+PP151384.1
+PP151343.1
+PP151344.1
+PP151345.1
+PP151351.1
+PP151352.1
+PP151353.1
+PP151354.1
+PP151355.1
+PP151356.1
+PP151357.1
+PP151362.1
+PP151363.1
+PP151365.1
+PP151366.1
+PP151368.1
+PP151369.1
+PP151370.1
+PP151372.1
+PP151373.1
+PP151374.1
+PP151376.1
+PP151377.1
+PP151378.1
+PP151379.1
+PP151380.1
+PP151381.1
+PP151382.1
+PP151385.1
+PP151386.1
+PP151387.1
+PP151391.1
+PP151394.1
+PP151395.1
+PP151396.1
+PP151397.1
+PP151398.1
+PP151400.1
+PP151403.1