6627b1c33bdef1886f84fce4df14d0dd5c786657
chmalee
  Fri Mar 8 17:10:21 2024 -0800
Make the DataTable update dynamically. Correctly use a hidden file input to keep track of submitted and unsubmitted files

diff --git src/hg/hgHubConnect/hooks/post-finish.c src/hg/hgHubConnect/hooks/post-finish.c
index f704b47..04f2645 100644
--- src/hg/hgHubConnect/hooks/post-finish.c
+++ src/hg/hgHubConnect/hooks/post-finish.c
@@ -1,156 +1,145 @@
 /* post-finish  - tus daemon post-finish hook program. Reads
  * a JSON encoded request to finsh an upload from a tus
  * client and moves a downloaded file to a specific user
  * directory. */
 #include "common.h"
 #include "linefile.h"
 #include "hash.h"
 #include "options.h"
 #include "wikiLink.h"
 #include "customTrack.h"
 #include "userdata.h"
 #include "jsonQuery.h"
 #include "jsHelper.h"
 #include "errCatch.h"
 #include "obscure.h"
 #include "hooklib.h"
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "post-finish - tus daemon post-finish hook program\n"
   "usage:\n"
   "   post-finish < input\n"
   );
 }
 
 /* Command line validation table. */
 static struct optionSpec options[] = {
    {NULL, 0},
 };
 
-struct jsonElement *makeDefaultResponse()
-/* Create the default response json with some fields pre-filled */
-{
-struct hash *defHash = hashNew(8);
-struct jsonElement *response = newJsonObject(defHash);
-// only the HTTP Response object is important to have by default, the other
-// fields will be created as needed
-jsonObjectAdd(response, HTTP_NAME, newJsonObject(hashNew(8)));
-return response;
-}
-
 int postFinish()
 /* post-finish hook for tus daemon. Read JSON encoded hook request from
  * stdin and write a JSON encoded hook to stdout. Writing to stderr
  * will be redirected to the tusd log and not seen by the user, so for
  * errors that the user needs to see, they need to be in the JSON response */
 {
 // TODO: create response object and do all error catching through that
 char *reqId = getenv("TUS_ID");
 // always return an exit status to the daemon and print to stdout, as
 // stdout gets sent by the daemon back to the client
 int exitStatus = 0;
 struct jsonElement *response = makeDefaultResponse();
 if (!(reqId))
     {
     rejectUpload(response, "not a TUS request");
     exitStatus = 1;
     }
 else
     {
     struct errCatch *errCatch = errCatchNew(0);
     if (errCatchStart(errCatch))
         {
         struct lineFile *lf = lineFileStdin(FALSE);
         char *request = lineFileReadAll(lf);
         struct jsonElement *req = jsonParse(request);
         fprintf(stderr, "Hook request:\n");
         jsonPrintToFile(req, NULL, stderr, 0);
         char *reqCookie= jsonQueryString(req, "", "Event.HTTPRequest.Header.Cookie[0]", NULL);
         if (reqCookie)
             {
             setenv("HTTP_COOKIE", reqCookie, 0);
             }
         fprintf(stderr, "reqCookie='%s'\n", reqCookie);
         char *userName = (loginSystemEnabled() || wikiLinkEnabled()) ? wikiLinkUserName() : NULL;
         fprintf(stderr, "userName='%s'\n'", userName);
         if (!userName)
             {
             rejectUpload(response, "not logged in");
             exitStatus = 1;
             }
         else
             {
             char *uploadFname = jsonQueryString(req, "", "Event.Upload.MetaData.filename", NULL);
             char *tusFile = jsonQueryString(req, "", "Event.Upload.Storage.Path", NULL);
             if (uploadFname == NULL)
                 {
                 rejectUpload(response, "No Event.Upload.filename setting");
                 exitStatus = -1;
                 }
             else if (tusFile == NULL)
                 {
                 rejectUpload(response, "No Event.Path setting");
                 exitStatus = -1;
                 }
             else
                 {
                 char *tusInfo = catTwoStrings(tusFile, ".info");
                 char *dataDir = getDataDir(userName);
                 char *newFile = catTwoStrings(dataDir, uploadFname);
                 fprintf(stderr, "moving %s to %s\n", tusFile, newFile);
                 // TODO: check if file exists or not and let user choose to overwrite
                 // and re-call this hook, for now just exit if the file exists
                 if (fileExists(newFile))
                     {
-                    rejectUpload(response, "file '%s' exists already, not overwriting");
+                    rejectUpload(response, "file '%s' exists already, not overwriting", newFile);
                     exitStatus = 1;
                     }
                 else
                     {
                     // the directory may not exist yet
                     int oldUmask = 00;
                     if (!isDirectory(dataDir))
                         {
                         fprintf(stderr, "making directory '%s'\n", dataDir);
                         // the directory needs to be 777, so ignore umask for now
                         oldUmask = umask(0);
                         makeDirsOnPath(dataDir);
                         // restore umask
                         umask(oldUmask);
                         }
                     copyFile(tusFile, newFile);
                     // the files definitely should not be executable!
                     chmod(newFile, 0666);
                     mustRemove(tusFile);
                     mustRemove(tusInfo);
                     }
                 }
             }
 
         // we've passed all the checks so we can return that we are safe
         if (exitStatus == 0)
             fillOutHttpResponseSuccess(response);
         }
     if (errCatch->gotError)
         {
         rejectUpload(response, errCatch->message->string);
         exitStatus = 1;
         }
     errCatchEnd(errCatch);
     }
 // always print a response no matter what
 jsonPrintToFile(response, NULL, stdout, 0);
 return exitStatus;
 }
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 optionInit(&argc, argv, options);
 if (argc != 1)
     usage();
 return postFinish();
 }