b3415b3e149e52942ef55b14077aec42fd450d1d galt Tue Dec 31 23:54:13 2024 -0800 minor compilter fix for gsBig. diff --git src/hg/gsBig/gsBig.c src/hg/gsBig/gsBig.c index 4dcfefa..e54f588 100644 --- src/hg/gsBig/gsBig.c +++ src/hg/gsBig/gsBig.c @@ -627,31 +627,31 @@ parPath = cloneString(parName); if (tmpDirName != NULL) tmpDir = cloneString(tmpDirName); if (optionExists("prerun")) { char *preFileName = optionVal("prerun", NULL); char seqName[128]; struct segment *seg = parseSegment(preFileName, 0, 100000000, seqName); writeSeg(seqName, seg, gtfFile, subFile, transFile); } else { struct dyString *dy = dyStringNew(1024); char tempFa[512], tempGs[512]; - char dir1[256], root1[128], ext1[64]; + char dir1[PATH_LEN], root1[FILENAME_LEN], ext1[FILEEXT_LEN]; int myPid = (int)getpid(); splitPath(faName, dir1, root1, ext1); while (faSpeedReadNext(lf, &seq.dna, &seq.size, &seq.name)) { int offset, sizeOne; struct segment *segList = NULL, *seg; char *seqName = cloneString(seq.name); int chunkNum = 0; for (offset = 0; offset < seq.size; offset += stepSize) { boolean allN = TRUE; int i; safef(tempFa, sizeof(tempFa), "%s/temp_gsBig_%d_%s_%d.fa",