f952b14fca3833e9d8fef0ae8a086ad15485b552 galt Wed Jan 1 02:11:38 2025 -0800 fix various errors for utils compiled on Rocky 9 hgwdev-new. diff --git src/hg/mouseStuff/phToPsl/phToPsl.c src/hg/mouseStuff/phToPsl/phToPsl.c index 7814e5d..75d2d8a 100644 --- src/hg/mouseStuff/phToPsl/phToPsl.c +++ src/hg/mouseStuff/phToPsl/phToPsl.c @@ -337,31 +337,31 @@ tSize = findSize(tSizeHash, tName); /* Loop through alignments between this query and target. */ while (convertOneAli(lf, qName, tName, qSize, tSize, f)) ; freez(&qName); return TRUE; } void phToPsl(char *inName, char *qSizes, char *tSizes, char *outName) /* phToPsl - Convert from Pattern Hunter to PSL format. */ { struct lineFile *lf = lineFileOpen(inName, TRUE); FILE *f = mustOpen(outName, "w"); -char dir[256], root[128], ext[64]; +char dir[PATH_LEN], root[FILENAME_LEN], ext[FILEEXT_LEN]; struct hash *qSizeHash = readSizes(qSizes); struct hash *tSizeHash = readSizes(tSizes); splitPath(inName, dir, root, ext); tName = optionVal("tName", root); pslWriteHead(f); while (convertOneQuery(lf, qSizeHash, tSizeHash, f)) ; } int main(int argc, char *argv[]) /* Process command line. */ { optionHash(&argc, argv);