f952b14fca3833e9d8fef0ae8a086ad15485b552
galt
  Wed Jan 1 02:11:38 2025 -0800
fix various errors for utils compiled on Rocky 9 hgwdev-new.

diff --git src/hg/utils/scaffoldFaToAgp/scaffoldFaToAgp.c src/hg/utils/scaffoldFaToAgp/scaffoldFaToAgp.c
index 76691c7..d11b426 100644
--- src/hg/utils/scaffoldFaToAgp/scaffoldFaToAgp.c
+++ src/hg/utils/scaffoldFaToAgp/scaffoldFaToAgp.c
@@ -57,31 +57,31 @@
     *retGapSize = gapSize;
 return (seqSize ? TRUE : FALSE);
 }
 
 void scaffoldFaToAgp(char *scaffoldFile)
 /* scaffoldFaToAgp - create AGP file, gap file and lift file 
 * from scaffold FA file */
 {
 DNA *scaffoldSeq;
 char *name;
 int size;
 struct agpFrag frag;
 struct agpGap scaffoldGap, fragGap;
 
 struct lineFile *lf = lineFileOpen(scaffoldFile, TRUE);
-char outDir[256], outFile[128], ext[64], outPath[512];
+char outDir[PATH_LEN], outFile[FILENAME_LEN], ext[FILEEXT_LEN], outPath[1024];
 FILE *agpFile = NULL, *gapFile = NULL, *liftFile = NULL;
 
 int fileNumber = 1;      /* sequence number in AGP file */
 int start = 0, end = 0;
 int chromSize = 0;
 int scaffoldCount = 0;
 
 int fragSize = 0, gapSize = 0;
 char *seq;
 int seqStart = 0;
 
 /* determine size of "unordered chromosome" that will be constructed.
  * This is needed for the lift file. */
 while (faMixedSpeedReadNext(lf, &scaffoldSeq, &size, &name))
     {