0967c36677fccbce9d80eb6e2aa21eed04759ebe gperez2 Fri Dec 20 17:42:53 2024 -0800 Announcing the release of the NCBI Gene Orthologs track, refs #30262 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 73eaf49..9e8485a 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -54,30 +54,73 @@ <p>You can sign-up to get these announcements via our <a target=_blank href="https://groups.google.com/a/soe.ucsc.edu/g/genome-announce?hl=en">Genome-announce</a> email list. We send around one short announcement email every two weeks.</p> <p>Smaller software changes are not announced here. A summary of the three-weekly release changes can be found <a target=_blank href="https://genecats.gi.ucsc.edu/builds/versions.html">here</a>. For the full list of our daily code changes head to our <a href="https://github.com/ucscGenomeBrowser/kent/commits/master" target=_blank>GitHub page</a>. Lastly, see our <a href="credits.html" target="_blank"> credits page</a> for acknowledgments of the data we host.</p> <!-- ============= 2024 archived news ============= --> <a name="2024"></a> +<a name="122024"></a> +<h2>Dec. 10, 2024 NCBI Gene Orthologs track available for Human (hg38), Mouse (mm39), + Zebrafish (danRer11), Dog (canFam6), and Cow (bosTau9)</h2> +<p> +We are excited to announce a new NCBI Orthologs track for the +<a href="/cgi-bin/hgTrackUi?db=hg38&g=refSeqComposite&position=default" + target="_blank">Human (hg38)</a>, +<a href="/cgi-bin/hgTrackUi?db=mm39&g=refSeqComposite&position=default" + target="_blank">Mouse (mm39)</a>, +<a href="/cgi-bin/hgTrackUi?db=danRer11&g=refSeqComposite&position=default" + target="_blank">Zebrafish (danRer11)</a>, +<a href="/cgi-bin/hgTrackUi?db=canFam6&g=refSeqComposite&position=default" + target="_blank">Dog (canFam6)</a>, and +<a href="/cgi-bin/hgTrackUi?db=danRer11&g=refSeqComposite&position=default" + target="_blank">Cow (bosTau9)</a> assemblies. This track shows orthologous genes across genomes +and allows you to explore gene symbols and orthology information by hovering over or clicking on +the track item, with links to the corresponding genome browsers:</p> + +<div class="text-center"> + <a href="https://genome.ucsc.edu/s/gperez2/hg38_NCBI_ortholog_track" target="_blank"> + <img src="../images/newsArchImages/ortholog_track.png" alt="hg38 session + visualizing the NCBI Gene Orthologs track" width='50%'></a> +</div> + +<p> +You can find the NCBI Orthologs track within the NCBI RefSeq composite track:</p> +<div class="text-center"> + <img class='text-center' width="50%" src="../../images/newsArchImages/ortholog_refSeq.png"> +</div> + +<p> +This track was created using the latest +<a href="https://ftp.ncbi.nih.gov/gene/DATA/" target="_blank">NCBI files</a> (gene2accession and +gene_orthologs). More information on this track can be found on the +<a href="/cgi-bin/hgTrackUi?db=hg38&g=refSeqComposite#TRACK_HTML" target="_blank">track description</a> +page.</p> +<p> +We would like to thank +<a href="https://www.ncbi.nlm.nih.gov/" target="_blank">NCBI</a> for making this data available. We +would also like to thank Jeltje van Baren, Mark Diekhans, Max Haeussler, and Gerardo Perez for the +creation and release of this track. +</p> + <a name="121024"></a> <h2>Dec. 10, 2024 DDG2P Developmental Disorders Genotype-to-Phenotype tracks for Human (hg19/hg38)</h2> <p> We are pleased to introduce the DDG2P (Developmental Disorders Genotype-to-Phenotype) track within our genomic database, now available for both the <a href="/cgi-bin/hgTrackUi?db=hg19&g=decipherDDG2P&position=default" target="_blank">GRCh37/hg19</a> and <a href="/cgi-bin/hgTrackUi?db=hg38&g=decipherDDG2P&position=default" target="_blank">GRCh38/hg38</a> human genome assemblies. This track is specially curated to enhance understanding of genetic variants associated with developmental disorders. This track facilitates the visual exploration and analysis of complex genetic variations that may influence developmental disorders.</p> <p> The DDG2P track incorporates an intuitive color-coding system alongside detailed tooltips for an enhanced user experience:</p>