ffa700c5d2138c455b25e736178ce963ef01a1ef gperez2 Fri Dec 20 13:44:49 2024 -0800 Adding an archive link for the old overlap.bb file, refs #34947 diff --git src/hg/makeDb/trackDb/human/revel.html src/hg/makeDb/trackDb/human/revel.html index a2462bc..ee6f315 100644 --- src/hg/makeDb/trackDb/human/revel.html +++ src/hg/makeDb/trackDb/human/revel.html @@ -123,31 +123,34 @@ <h2>Data access</h2> <p> REVEL scores are available at the <a href="https://sites.google.com/site/revelgenomics/" target="_blank"> REVEL website</a>. The site provides precomputed REVEL scores for all possible human missense variants to facilitate the identification of pathogenic variants among the large number of rare variants discovered in sequencing studies. </p> <p> The REVEL data on the UCSC Genome Browser can be explored interactively with the <a href="../cgi-bin/hgTables">Table Browser</a> or the -<a href="../cgi-bin/hgIntegrator">Data Integrator</a>. +<a href="../cgi-bin/hgIntegrator">Data Integrator</a>. The previous overlap bigBed version file is +available in the +<a href="https://hgdownload.soe.ucsc.edu/goldenPath/archive/$db/revel/" +target="_blank">archives</a> of our downloads server. For automated download and analysis, the genome annotation is stored at UCSC in bigWig files that can be downloaded from <a href="http://hgdownload.soe.ucsc.edu/gbdb/$db/revel/" target="_blank">our download server</a>. The files for this track are called <tt>a.bw, c.bw, g.bw, t.bw</tt>. Individual regions or the whole genome annotation can be obtained using our tool <tt>bigWigToWig</tt> which can be compiled from the source code or downloaded as a precompiled binary for your system. Instructions for downloading source code and binaries can be found <a href="http://hgdownload.soe.ucsc.edu/downloads.html#utilities_downloads">here</a>. The tools can also be used to obtain features confined to given range, e.g. <br> <br> <tt>bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/$db/revel/a.bw stdout</tt> <br> <h2>Methods</h2>