1891633f3daf8ca3fb2342cb421b46bcdb68feec
hiram
  Fri Dec 13 11:46:42 2024 -0800
fix spelling of trackDb variable refs #34370

diff --git src/hg/utils/automation/asmHubTrackDb.sh src/hg/utils/automation/asmHubTrackDb.sh
index abe8b96..5538def 100755
--- src/hg/utils/automation/asmHubTrackDb.sh
+++ src/hg/utils/automation/asmHubTrackDb.sh
@@ -924,31 +924,31 @@
   printf "track ensGene
 shortLabel Ensembl genes
 longLabel Ensembl genes %s
 group genes
 priority 40
 visibility pack
 color 150,0,0
 itemRgb on
 type bigGenePred
 bigDataUrl bbi/%s.ensGene.bb%s
 searchIndex %s
 labelFields name,name2
 defaultLabelFields name2
 baseColorUseCds given
 baseColorDefault genomicCodons
-labelSeperator \" \"
+labelSeparator \" \"
 html html/%s.ensGene\n\n" "${ensVersion}" "${asmId}" "${searchTrix}" "${indexList}" "${asmId}"
 fi
 
 $scriptDir/asmHubEnsGene.pl $asmId $buildDir/html/$asmId.names.tab $buildDir/bbi/$asmId > $buildDir/html/$asmId.ensGene.html "${ensVersion}"
 
 else
   printf "# no ensGene found\n" 1>&2
 fi
 
 ###################################################################
 # Ensembl/ebiGene for HPRC project
 if [ -d ${buildDir}/trackData/ebiGene ]; then
  export ebiGeneBb=`ls ${buildDir}/trackData/ebiGene/*.bb 2> /dev/null || true | head -1`
  if [ -s "${ebiGeneBb}" ]; then
     export ebiGeneLink=`echo $ebiGeneBb | sed -e 's#.*trackData#../trackData#;'`
@@ -973,31 +973,31 @@
       ebiVersion=`cat "${buildDir}/trackData/ebiGene/version.txt"`
     fi
 
     printf "track ebiGene
 shortLabel Ensembl %s
 longLabel Ensembl genes version %s
 group genes
 visibility pack
 color 150,0,0
 itemRgb on
 type bigGenePred
 bigDataUrl bbi/%s.ebiGene.bb%s
 searchIndex name,name2
 labelFields name,name2
 defaultLabelFields name2
-labelSeperator \" \"
+labelSeparator \" \"
 html html/%s.ebiGene\n\n" "${ebiVersion}" "${ebiVersion}" "${asmId}" "${searchTrix}" "${asmId}"
 
 $scriptDir/asmHubEbiGene.pl $asmId $buildDir/html/$asmId.names.tab $buildDir/bbi/$asmId > $buildDir/html/$asmId.ebiGene.html "${ebiVersion}"
  fi
 
 fi
 
 ###################################################################
 # hubLinks is for mouseStrains specific hub only
 export hubLinks="/hive/data/genomes/asmHubs/hubLinks"
 if [ -s ${hubLinks}/${asmId}/rnaSeqData/$asmId.trackDb.txt ]; then
   printf "include rnaSeqData/%s.trackDb.txt\n\n" "${asmId}"
 fi
 ##  for mouse strain hubs only
 ## turned off 2022-11-02 until these can be correctly translated