12f89e2b40fafd9330ac50808a03cf60afc16122 mspeir Fri Dec 27 11:00:35 2024 -0800 updating supported track types for api, refs #26350 diff --git src/hg/htdocs/goldenPath/help/api.html src/hg/htdocs/goldenPath/help/api.html index 6cd287b..f7e2567 100755 --- src/hg/htdocs/goldenPath/help/api.html +++ src/hg/htdocs/goldenPath/help/api.html @@ -246,53 +246,71 @@ <a href='https://hgdownload.soe.ucsc.edu/hubs/' target=_blank>Genark</a> set of assembly hubs. </p> --> <p> The <b>/list/files</b> endpoint only works for UCSC hosted genome assemblies, not for external hosted assembly hubs. </p> <p> Any extra parameters not allowed in a function will be flagged as an error. </p> <!-- ========== Supported track types ======================= --> <a id="Track_types"></a> <h2>Supported track types for getData functions</h2> +<div class="row"> + <!-- Left column --> + <div class="col-md-6"> <p> <ul> + <li>altGraphX (e.g. 'sibTxGraph' for hg19)</li> <li><a href='/goldenPath/help/barChart.html' target=_blank>barChart/bigBarChart</a></li> <li><a href='/FAQ/FAQformat.html#format1' target=_blank>bed</a></li> <li><a href='/goldenPath/help/bigBed.html' target=_blank>bigBed</a></li> <li><a href='/goldenPath/help/bigChain.html' target=_blank>bigChain</a></li> <li><a href='/goldenPath/help/bigGenePred.html' target=_blank>bigGenePred</a></li> <li><a href='/goldenPath/help/bigLolly.html' target=_blank>bigLolly</a></li> <li><a href='/goldenPath/help/bigNarrowPeak.html' target=_blank>bigNarrowPeak</a></li> <li><a href='/goldenPath/help/bigMaf.html' target=_blank>bigMaf</a></li> <li><a href='/goldenPath/help/bigPsl.html' target=_blank>bigPsl</a></li> <li><a href='/goldenPath/help/bigWig.html' target=_blank>bigWig</a></li> <li><a href='/goldenPath/help/chain.html' target=_blank>chain</a></li> + <li>ctgPos (e.g. 'ctgPos2' for hg19)</li> + </ul> + </div> + <!-- Right column --> + <div class="col-md-6"> + <p> + <ul> + <li>expRatio (e.g. 'gnfAtlas2' for mm9)</li> + <li>factorSource (e.g. 'encRegTfbsClustered' for hg38)</li> <li><a href='/FAQ/FAQformat.html#format9' target=_blank>genePred</a></li> + <li>gvf (e.g. 'cnvDevDelayCase' for hg19)</li> <li><a href='/goldenPath/help/interact.html' target=_blank>interact/bigInteract</a></li> <li><a href='/FAQ/FAQformat.html#format12' target=_blank>narrowPeak</a></li> + <li><a href='/goldenPath/help/net.html' target=_blank>netAlign</a></li> <li><a href='/FAQ/FAQformat.html#format17' target=_blank>peptideMapping</a></li> + <li><a href='/FAQ/FAQformat.html#format10' target=_blank>pgSnp</a></li> <li><a href='/FAQ/FAQformat.html#format2' target=_blank>psl</a></li> <li><a href='http://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/rmsk.sql' target=_blank>rmsk - repeat masker</a></li> <li><a href='/goldenPath/help/wiggle.html' target=_blank>wiggle/wig</a></li> -<li>(Work is underway to support additional track types)</li> </ul> -</p> + </div> +</div> +<p> +Work is underway to support additional track types <!-- ========== API on mirrors and local installations ======================= --> <a id="Mirrors"></a> <h2>Using the API on mirrors and local installations</h2> <p> In order to access the API from a <a href='/mirror.html' target=_blank>mirror installation</a> or one of the UCSC official mirrors, the complete URL with the cgi-bin should be used:</p> <ul> <li><strong>Europe</strong>: https://genome-euro.ucsc.edu/cgi-bin/hubApi/</li> <li><strong>Asia</strong>: https://genome-asia.ucsc.edu/cgi-bin/hubApi/<li> <li><strong>Mirror installation</strong>: https://your.server.edu/cgi-bin/hubApi/</li> </ul> <p>