36fc997c4663f577c338a94d24cd968836c655af gperez2 Fri Jan 31 12:23:27 2025 -0800 Releasing and announcing the COSMIC v101 for hg38 and hg19, refs #34904 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 3805cf1bbba..e7e1c273800 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -52,30 +52,51 @@ <p>You can sign-up to get these announcements via our <a target=_blank href="https://groups.google.com/a/soe.ucsc.edu/g/genome-announce?hl=en">Genome-announce</a> email list. We send around one short announcement email every two weeks.</p> <p>Smaller software changes are not announced here. A summary of the three-weekly release changes can be found <a target=_blank href="https://genecats.gi.ucsc.edu/builds/versions.html">here</a>. For the full list of our daily code changes head to our <a href="https://github.com/ucscGenomeBrowser/kent/commits/master" target=_blank>GitHub page</a>. Lastly, see our <a href="credits.html" target="_blank"> credits page</a> for acknowledgments of the data we host.</p> <!-- ============= 2025 archived news ============= --> <a name="2025"></a> +<a name="013125"></a> +<h2>Jan. 31, 2025 New COSMIC track for hg19 and update for hg38 COSMIC track</h2> +<p> +We are happy to announce the release of the new COSMIC track for <a target="_blank" +href="/cgi-bin/hgTrackUi?db=hg19&g=cosmicMuts&position=default">hg19/GRCh37</a> and +an update for the +<a href="/cgi-bin/hgTrackUi?db=hg38&g=cosmicMuts&position=default" target="_blank">hg38/GRCh38</a>. +The <a target="_blank" href="https://cancer.sanger.ac.uk/cosmic/about" +>Catalogue Of Somatic Mutations In Cancer</a> (COSMIC) is an online database of expert manually +curated somatic mutation information relating to human cancers. The COSMIC track displays data from +the <a target="_blank" +href="https://cancer.sanger.ac.uk/cosmic/release_notes/">COSMIC v101 release</a>, which includes +Whole Genome Sequencing (WGS) data from 383 samples, including 305 individuals exposed to ionizing +radiation as children during the 1986 Chernobyl accident and 78 individuals born after 1986. WGS +detected a total of 318,907 somatic mutations, including 315,022 non-coding variants and 3,885 +coding variants.</p> +<p> +We would like to thank COSMIC for providing the data to UCSC. We would also like to thank +Lou Nassar, Max Haeussler, and Gerardo Perez for their efforts on this release.</p> + + <!-- ============= 2024 archived news ============= --> <a name="2024"></a> <a name="122024"></a> <h2>Dec. 20, 2024 NCBI Gene Orthologs track available for Human (hg38), Mouse (mm39), Zebrafish (danRer11), Dog (canFam6), and Cow (bosTau9)</h2> <p> We are excited to announce a new NCBI Orthologs track for the <a href="/cgi-bin/hgTrackUi?db=hg38&g=refSeqComposite&position=default" target="_blank">Human (hg38)</a>, <a href="/cgi-bin/hgTrackUi?db=mm39&g=refSeqComposite&position=default" target="_blank">Mouse (mm39)</a>, <a href="/cgi-bin/hgTrackUi?db=danRer11&g=refSeqComposite&position=default" target="_blank">Zebrafish (danRer11)</a>, <a href="/cgi-bin/hgTrackUi?db=canFam6&g=refSeqComposite&position=default"