Commits for hiram

v477_preview2 to v477_base (2025-01-27 to 2025-02-03) v477

d94b7ab22f12dfc6b2168b0af5c7a71d1195a7bf Wed Jan 29 15:38:56 2025 -0800

• new repeat masker installed no redmine
  • src/hg/makeDb/doc/repeatMasker.txt - lines changed 647, context: html, text, full: html, text

e17110f14580a0246f745059d56b474d68ee0b84 Fri Jan 31 16:25:08 2025 -0800

• adding a couple per user request refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv - lines changed 2, context: html, text, full: html, text

84391fdaa9862e725044a75732fabb41376d5ed1 Fri Jan 31 16:47:07 2025 -0800

• add one per user request refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv - lines changed 1, context: html, text, full: html, text

9eafbb671776acf18b20ed23ec14b51e49a2a5d2 Fri Jan 31 16:49:25 2025 -0800

• add one per user request refs #29545
  • src/hg/makeDb/doc/fungiAsmHub/fungi.orderList.tsv - lines changed 1, context: html, text, full: html, text

5fe502b1541a5af8d22f10ee4879c2489468fc55 Sat Feb 1 19:42:27 2025 -0800

• asmHubs/master.run.list
  • src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv - lines changed 1, context: html, text, full: html, text

54e8b53101ae6e6c2f9d686f6292343d277a130b Sat Feb 1 19:42:45 2025 -0800

• adding a couple per user request
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 2, context: html, text, full: html, text

909ff18f8b72ca31971508ca13eed84633e1dc1e Sun Feb 2 10:24:45 2025 -0800

• upgrading to new version of RM no redmine
  • src/hg/utils/automation/doRepeatMasker.pl - lines changed 5, context: html, text, full: html, text

a913e02395d928f3ee5fa591c309b0e0938df192 Sun Feb 2 10:34:58 2025 -0800

• adding a couple per user request refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/viralAsmHub/viral.orderList.tsv - lines changed 2, context: html, text, full: html, text

ba9d5aafd83e09d48df9868ac0034154a7f6f212 Sun Feb 2 15:03:50 2025 -0800

• adding one per user request refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv - lines changed 1, context: html, text, full: html, text