07639647efe6cfe6dbc643b8fae13c3dd153c528 markd Fri Jan 17 19:07:18 2025 -0800 work on docker utils build diff --git src/hg/makeDb/hgLoadBed/makefile src/hg/makeDb/hgLoadBed/makefile index 23730ad510c..4935d71bc8f 100644 --- src/hg/makeDb/hgLoadBed/makefile +++ src/hg/makeDb/hgLoadBed/makefile @@ -1,84 +1,4 @@ kentSrc = ../../.. -include ../../../inc/common.mk - -L += -lm ${MYSQLLIBS} -MYLIBDIR = ../../../lib/${MACHTYPE} -MYLIBS = ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a -SQL_FILES = ../../lib/encode/encodePeak.sql ../../lib/pgSnp.sql ../../lib/bedDetail.sql ../../lib/bigPsl.as ../../lib/barChartBed.sql ../../lib/interact.sql - -O = hgLoadBed.o A = hgLoadBed +include ${kentSrc}/inc/cgiLoader.mk -hgLoadBed: $O ${MYLIBS} - ${CC} ${COPT} ${CFLAGS} -o ${DESTDIR}${BINDIR}/${A}${EXE} $O ${MYLIBS} $L - ${STRIP} ${DESTDIR}${BINDIR}/${A}${EXE} - -compile: ${O} ${MYLIBS} - ${CC} ${COPT} ${CFLAGS} -o ${A} $O ${MYLIBS} $L - -cgi:: compile - chmod a+rx $A${EXE} - @if [ ! -d "${CGI_BIN}-${USER}/loader" ]; then \ - ${MKDIR} ${CGI_BIN}-${USER}/loader; \ - fi - rm -f ${CGI_BIN}-${USER}/loader/$A - mv $A${EXE} ${CGI_BIN}-${USER}/loader/$A - for F in ${SQL_FILES}; do \ - B=`basename $$F` ; \ - rm -f ${DESTDIR}${CGI_BIN}-${USER}/loader/$$B ; \ - cp -p $$F ${DESTDIR}${CGI_BIN}-${USER}/loader/$$B ; \ - done - -alpha:: strip - @if [ ! -d "${CGI_BIN}/loader" ]; then \ - ${MKDIR} ${CGI_BIN}/loader; \ - fi - rm -f ${CGI_BIN}/loader/$A - mv $A${EXE} ${CGI_BIN}/loader/$A - for F in ${SQL_FILES}; do \ - B=`basename $$F` ; \ - rm -f ${DESTDIR}${CGI_BIN}/loader/$$B ; \ - cp -p $$F ${DESTDIR}${CGI_BIN}/loader/$$B ; \ - done - -beta:: strip - @if [ ! -d "${CGI_BIN}-beta/loader" ]; then \ - ${MKDIR} ${CGI_BIN}-beta/loader; \ - fi - rm -f ${CGI_BIN}-beta/loader/$A - mv $A${EXE} ${CGI_BIN}-beta/loader/$A - for F in ${SQL_FILES}; do \ - B=`basename $$F` ; \ - rm -f ${DESTDIR}${CGI_BIN}-beta/loader/$$B ; \ - cp -p $$F ${DESTDIR}${CGI_BIN}-beta/loader/$$B ; \ - done - -strip:: compile - ${STRIP} $A${EXE} - chmod g+w $A${EXE} - chmod a+rx $A${EXE} - -install:: strip - @if [ ! -d "${DESTDIR}${CGI_BIN}/loader" ]; then \ - ${MKDIR} "${DESTDIR}${CGI_BIN}/loader"; \ - fi - rm -f ${DESTDIR}${CGI_BIN}/loader/$A - mv $A${EXE} ${DESTDIR}${CGI_BIN}/loader/$A - for F in ${SQL_FILES}; do \ - B=`basename $$F` ; \ - rm -f ${DESTDIR}${CGI_BIN}/loader/$$B ; \ - cp -p $$F ${DESTDIR}${CGI_BIN}/loader/$$B ; \ - done - -debug:: $O - ${CC} $O ${MYLIBS} ${L} - mv ${AOUT} $A${EXE} - -clean:: - rm -f $O $A${EXE} tests/bed.tab - -test: - cd tests && ./RunTest.sh - -test_verbose: - cd tests && ./RunTest.sh -verbose