File Changes for chmalee

v476_base to v477_preview (2025-01-13 to 2025-01-21) v477

• src/hg/hgHubConnect/hooks/testPostFinishHook.txt
  • lines changed 74, context: html, text, full: html, text
    b977befd83f4f7d99cfddb6b279b7c0b52665085 Mon Jan 13 12:53:05 2025 -0800
    Remove test hook files that were never meant to be committed, refs #35018
• src/hg/hgHubConnect/hooks/testPreCreateHook.txt
  • lines changed 44, context: html, text, full: html, text
    b977befd83f4f7d99cfddb6b279b7c0b52665085 Mon Jan 13 12:53:05 2025 -0800
    Remove test hook files that were never meant to be committed, refs #35018
• src/hg/hgHubConnect/makefile
  • lines changed 2, context: html, text, full: html, text
    6a9fee7fc8a682f48125eec21ea4fa767c8b6cab Fri Jan 17 10:58:20 2025 -0800
    Fix hgHubConnect hook targets to use '${MAKE}' instead of 'make'
• src/hg/hgHubConnect/trackHubWizard.c
  • lines changed 9, context: html, text, full: html, text
    b7e0b5f7674dfa7600149aab93d79bed3c3b926a Mon Jan 13 17:40:22 2025 -0800
    When prefixing a file specified by the hubspace ui with the userDataDir, run realpath(3) on the file name to prevent looking up system files, refs #35018
  • lines changed 1, context: html, text, full: html, text
    a6e5c99f562491a34c8b1d69663b9a0c46c9adfe Tue Jan 14 15:19:38 2025 -0800
    Make hubspace tusd endpoint defined by hg.conf variable hubSpaceTusdEndpoint
  • lines changed 3, context: html, text, full: html, text
    6d748e8ea3c2a87f079e1e3dcd6b3f33c74ec76c Tue Jan 14 15:29:31 2025 -0800
    If someone calls generateApiKey without being logged in, generate an error message instead of just returning NULL
  • lines changed 12, context: html, text, full: html, text
    55de7ef426a462247f89f48afd9aa6a2eb2cdd19 Thu Jan 16 17:11:17 2025 -0800
    Remove a bunch of dead experimental hubspace code, and make sure to cgi-encode hub names, refs #35018
• src/hg/inc/userdata.h
  • lines changed 3, context: html, text, full: html, text
    a6e5c99f562491a34c8b1d69663b9a0c46c9adfe Tue Jan 14 15:19:38 2025 -0800
    Make hubspace tusd endpoint defined by hg.conf variable hubSpaceTusdEndpoint
  • lines changed 27, context: html, text, full: html, text
    55de7ef426a462247f89f48afd9aa6a2eb2cdd19 Thu Jan 16 17:11:17 2025 -0800
    Remove a bunch of dead experimental hubspace code, and make sure to cgi-encode hub names, refs #35018
• src/hg/js/external/tus.js
  • lines changed 4973, context: html, text, full: html, text
    3243eb0034564ee8a123d99ba186fea78c06d09d Mon Jan 13 14:05:01 2025 -0800
    Remove tus javascript library now that we are using uppy to manage uploads, refs #35018
• src/hg/js/hgMyData.js
  • lines changed 3, context: html, text, full: html, text
    14f0e7fd728cdbfae3389e494fd98bc4a29d5c4f Tue Jan 14 13:53:59 2025 -0800
    Update history state on row removal in hubSpace UI so after removing a file, clicking a link to view a separate file in the genome browser and then hitting the web browser back button shows the correct state
  • lines changed 5, context: html, text, full: html, text
    b17e57befc1ec01135c98e91d93e5692b1b0f523 Tue Jan 14 14:06:59 2025 -0800
    Oops print numbers in 'byte' sizes rather than metric sizes, refs #35018
  • lines changed 14, context: html, text, full: html, text
    d8c1e04bf62d885bad423a5f8ad7222421a15cc0 Tue Jan 14 14:49:21 2025 -0800
    After an upload or upload batch is done, clear the uppy state so that when the upload button is clicked again you don't have to click 'done' first, refs #35018
  • lines changed 4, context: html, text, full: html, text
    a6e5c99f562491a34c8b1d69663b9a0c46c9adfe Tue Jan 14 15:19:38 2025 -0800
    Make hubspace tusd endpoint defined by hg.conf variable hubSpaceTusdEndpoint
  • lines changed 5, context: html, text, full: html, text
    e990c76fb9538fc05ace961289390d88f2ecec84 Tue Jan 14 15:40:36 2025 -0800
    Remove orphaned defaultFileType function, refs #35018
  • lines changed 2, context: html, text, full: html, text
    135003b02fd3d3cd21400ea5b1bb58a385892efb Tue Jan 14 15:46:05 2025 -0800
    Change for..in loop to for..of, refs #35018
  • lines changed 2, context: html, text, full: html, text
    fc715fcc5977edc36a079b3a1a9da5534ddec030 Tue Jan 14 15:57:02 2025 -0800
    Add stopPropagation() call when the convenient view button link is clicked in hubspace, refs #35018
• src/hg/lib/userdata.c
  • lines changed 11, context: html, text, full: html, text
    b7e0b5f7674dfa7600149aab93d79bed3c3b926a Mon Jan 13 17:40:22 2025 -0800
    When prefixing a file specified by the hubspace ui with the userDataDir, run realpath(3) on the file name to prevent looking up system files, refs #35018
  • lines changed 9, context: html, text, full: html, text
    b50eb72560c220a7d4bb6856cedfe1e23fd1d2bf Tue Jan 14 16:08:32 2025 -0800
    oops I deleted the web accessible file uploads location not the tusd endpoint location, refs Hiram email
  • lines changed 110, context: html, text, full: html, text
    55de7ef426a462247f89f48afd9aa6a2eb2cdd19 Thu Jan 16 17:11:17 2025 -0800
    Remove a bunch of dead experimental hubspace code, and make sure to cgi-encode hub names, refs #35018
  • lines changed 11, context: html, text, full: html, text
    90a4b891ec9646bb4f4448a2bf53e714a8aa4492 Fri Jan 17 11:55:54 2025 -0800
    When creating track stanzas after uploading a file to hubspace, wrap the bigBedFileOpen call in an errCatch so that if the file is actually not a bigBed, the user doesn't encounter some mysterious behavior when bigBedFileOpen errAborts, refs #35064