2019790b4445ac76dfc6e591fc1575abac740b5a gperez2 Fri Jan 17 18:24:02 2025 -0800 Renaming DDG2P announcement to DECIPHER Population CNVs, refs #35053 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index d8e9809..3805cf1 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -99,63 +99,61 @@

This track was created using the latest NCBI files (gene2accession and gene_orthologs). More information on this track can be found on the track description page.

We would like to thank NCBI for making this data available. We would also like to thank Jeltje van Baren, Mark Diekhans, Max Haeussler, and Gerardo Perez for the creation and release of this track.

Dec. 10, 2024 DDG2P Developmental Disorders Genotype-to-Phenotype tracks for Human (hg19/hg38)

Dec. 10, 2024 DECIPHER Population CNVs for Human (hg19/hg38)

-We are pleased to introduce the DDG2P (Developmental Disorders Genotype-to-Phenotype) track within -our genomic database, now available for both the -GRCh37/hg19 +We are pleased to introduce the DECIPHER Population CNVs track for both the +GRCh37/hg19 and -GRCh38/hg38 -human genome assemblies. This track is specially curated to enhance understanding of genetic -variants associated with developmental disorders. This track facilitates the visual exploration and -analysis of complex genetic variations that may influence developmental disorders.

+GRCh38/hg38 +human genome assemblies. This track shows common copy-number variants (CNVs) and their population +frequencies.

-The DDG2P track incorporates an intuitive color-coding system alongside detailed tooltips for an -enhanced user experience:

+The Population CNVs track incorporates an intuitive color-coding system alongside detailed +tooltips for an enhanced user experience:

Red: Indicates a loss of genetic material (deletions).
Blue: Signifies a gain of genetic material (duplications).
Grey: Marks areas with deletions or duplication (indel).

The DDG2P track's mouseover tooltip provides the following information about the data:

The Population CNVs track's mouseover tooltip provides the following information about the data:

Position: Chromosomal range of the CNV.
Type of CNV: Loss, gain, or deletions/duplications.
Frequency: Prevalence of the CNV in the population.
Observations: Times the CNV was noted in the dataset.
Sample Size: Number of samples analyzed.

We would like to thank DECIPHER for making the data publicly available. We would also like to thank Yesenia Puga, Gerardo Perez, and -Jairo Navarro for the creation and release of the DDG2P track on the UCSC Genome Browser.

+Jairo Navarro for the creation and release of the Population CNVs track on the UCSC Genome Browser.

Nov. 8, 2024 New GENCODE gene tracks: Human V47 (hg19/hg38) - Mouse M36 (mm39)

We are happy to announce new GENCODE Gene annotation tracks, which correspond to Ensembl 113, for three assemblies: hg19/GRCh37, hg38/GRCh38, and mm39/GRCm39. For human, the GENCODE V47 annotations were mapped to hg38/GRCh38 and then back-mapped to the hg19/GRCh37 assembly. For all three assemblies, the gene sets contain the following tracks: