a3c5195d051868c371255e6fd6fb2fe81632ce44
gperez2
  Mon Jan 13 17:53:39 2025 -0800
Updating the script to accommodate hgwbeta tables for hg19, no RM

diff --git src/utils/qa/checkSyncAndMetaDataAll.py src/utils/qa/checkSyncAndMetaDataAll.py
index 19e4f85..d7153e7 100755
--- src/utils/qa/checkSyncAndMetaDataAll.py
+++ src/utils/qa/checkSyncAndMetaDataAll.py
@@ -11,31 +11,31 @@
 #Iterate through allDbs and run checkSync.csh comparing to hgw1
 for db in allDbs:
     checkSyncResults = get_ipython().getoutput(u"checkSync.csh '$db' hgw1 hgwbeta")
     if db in curatedHubs:
         continue
     if db == 'mm9':
         if '  0 hgw1.only' not in str(checkSyncResults) and '  4 hgwbeta.only' not in str(checkSyncResults):
             troubleDbs.append(db)
     elif db == 'mm39':
         if '  1 hgw1.only' not in str(checkSyncResults) and '  3 hgwbeta.only' not in str(checkSyncResults):
             troubleDbs.append(db)
     elif db == 'hg18':
         if '  0 hgw1.only' not in str(checkSyncResults) and '  4 hgwbeta.only' not in str(checkSyncResults):
             troubleDbs.append(db)
     elif db == 'hg19':
-        if '  0 hgw1.only' not in str(checkSyncResults) and '  5 hgwbeta.only' not in str(checkSyncResults):
+        if '  0 hgw1.only' not in str(checkSyncResults) and '  6 hgwbeta.only' not in str(checkSyncResults):
             troubleDbs.append(db)
     elif db == 'hg38':
         if '  3 hgw1.only' not in str(checkSyncResults) and '  3 hgwbeta.only' not in str(checkSyncResults):
             troubleDbs.append(db)
     else:
         if '  0 hgw1.only' not in str(checkSyncResults) and '  2 hgwbeta.only' not in str(checkSyncResults):
             troubleDbs.append(db)
     
 #Iterate through allDbs and run checkSync.csh comparing to hgw2, informing of discrepancies
 for db in allDbs:
     checkSyncResults = get_ipython().getoutput(u"checkSync.csh '$db' hgw2 hgwbeta")
     if db in curatedHubs:
         continue
     if db == 'mm9':
         if '  0 hgw1.only' not in str(checkSyncResults) and '  4 hgwbeta.only' not in str(checkSyncResults)             and db not in troubleDbs:
@@ -44,31 +44,31 @@
             get_ipython().system(u' echo')
             troubleDbs.append(db)
     elif db == 'mm39':
         if '  1 hgw1.only' not in str(checkSyncResults) and '  3 hgwbeta.only' not in str(checkSyncResults)             and db not in troubleDbs:
             get_ipython().system(u" echo There looks to be a discrepancy between hgw1 and hgw2 checkSync for: '$db'")
             get_ipython().system(u" echo Follow up with checkSync.csh '$db' hgw1 hgw2")
             get_ipython().system(u' echo')
             troubleDbs.append(db)
     elif db == 'hg18':
         if '  0 hgw1.only' not in str(checkSyncResults) and '  4 hgwbeta.only' not in str(checkSyncResults)             and db not in troubleDbs:
             get_ipython().system(u" echo There looks to be a discrepancy between hgw1 and hgw2 checkSync for: '$db'")
             get_ipython().system(u" echo Follow up with checkSync.csh '$db' hgw1 hgw2")
             get_ipython().system(u' echo')
             troubleDbs.append(db)
     elif db == 'hg19':
-        if '  0 hgw1.only' not in str(checkSyncResults) and '  5 hgwbeta.only' not in str(checkSyncResults)             and db not in troubleDbs:
+        if '  0 hgw1.only' not in str(checkSyncResults) and '  6 hgwbeta.only' not in str(checkSyncResults)             and db not in troubleDbs:
             get_ipython().system(u" echo There looks to be a discrepancy between hgw1 and hgw2 checkSync for: '$db'")
             get_ipython().system(u" echo Follow up with checkSync.csh '$db' hgw1 hgw2")
             get_ipython().system(u' echo')
             troubleDbs.append(db)
     elif db == 'hg38':
         if '  0 hgw1.only' not in str(checkSyncResults) and '  3 hgwbeta.only' not in str(checkSyncResults)             and db not in troubleDbs:
             get_ipython().system(u" echo There looks to be a discrepancy between hgw1 and hgw2 checkSync for: '$db'")
             get_ipython().system(u" echo Follow up with checkSync.csh '$db' hgw1 hgw2")
             get_ipython().system(u' echo')
             troubleDbs.append(db)
     else:
         if '  0 hgw1.only' not in str(checkSyncResults) and '  2 hgwbeta.only' not in str(checkSyncResults)             and db not in troubleDbs:
             get_ipython().system(u" echo There looks to be a discrepancy between hgw1 and hgw2 checkSync for: '$db'")
             get_ipython().system(u" echo Follow up with checkSync.csh '$db' hgw1 hgw2")
             get_ipython().system(u' echo')