2f75ea14748d867f3ab9f56ccaa69bc74e9486a3
gperez2
  Tue Jan 14 22:35:06 2025 -0800
Renaming/updating DDG2P track to DECIPHER Population CNVs, refs #35053

diff --git src/hg/makeDb/trackDb/human/decipher.ra src/hg/makeDb/trackDb/human/decipher.ra
index 2dac041..e669439 100644
--- src/hg/makeDb/trackDb/human/decipher.ra
+++ src/hg/makeDb/trackDb/human/decipher.ra
@@ -1,81 +1,81 @@
 track decipherContainer
 superTrack on
 shortLabel DECIPHER
 longLabel DECIPHER
 cartVersion 7
 group phenDis
-pennantIcon New red ../goldenPath/newsarch.html#121024 "DDG2P released December 10, 2024"
+pennantIcon New red ../goldenPath/newsarch.html#121024 "DECIPHER Population CNVs released December 10, 2024"
 
     track decipher
     priority 1
     shortLabel DECIPHER CNVs
     longLabel DECIPHER CNVs
     group phenDis
     visibility pack
     type bigBed 9 +
     itemRgb on
     tableBrowser off knownCanonToDecipher knownToDecipher decipherRaw
     bigDataUrl /gbdb/$D/decipher/decipherCnv.bb
     url https://www.deciphergenomics.org/patient/$$
     urlLabel Decipher Patient View:
     filter.size 0
     filterByRange.size on
     filterLimits.size 2:170487333
     filterValues.variant_class Amplification,Copy-Number Gain,Deletion,Duplication,Duplication/Trip
     filterValues.pathogenicity Benign,Likely Benign,Likely Pathogenic,Pathogenic,Uncertain,Unknown
     mergeSpannedItems on
     searchIndex name
     mouseOverField _mouseOvera
     html decipherContainer
     parent decipherContainer
 
     track decipherSnvs
     priority 2
     shortLabel DECIPHER SNVs
     longLabel DECIPHER: Chromosomal Imbalance and Phenotype in Humans (SNVs)
     group phenDis
     visibility pack
     color 0,0,0
     type bed 4
     tableBrowser off decipherSnvsRaw
     prevExonText Left edge
     nextExonText Right edge
     html decipherContainer
     parent decipherContainer
 
-    track decipherDDG2P
+    track decipherPopulation
     priority 3
     parent decipherContainer
     type bigBed 9 +
-    shortLabel DECIPHER DDG2P
-    longLabel DECIPHER: Developmental Disorders panel in the Gene2Phenotype database (DDG2P)
-    bigDataUrl /gbdb/$D/decipher/ddg2pSyndromes.bb
+    shortLabel DECIPHER Population CNVs
+    longLabel DECIPHER: Population CNVs
+    bigDataUrl /gbdb/$D/decipher/population_cnv.bb
     visibility pack
     mouseOver <b>Position</b>: $chrom:${chromStart}-${chromEnd}<br> <b>Type of CNV</b>: $type<br> <b>Frequency of CNV</b>: $frequency<br> <b>Number of Observations</b>: $observations<br> <b>Sample Size of Study</b>: $sample_size<br>
     html decipherContainer
     searchIndex name
     noScoreFilter on
     filterValues.type loss,gain,del/dup
     filter.sample_size 0
     pennantIcon New red ../goldenPath/newsarch.html#121024 "Released December 10, 2024"
 
 
 searchTable decipher
 searchMethod exact
 searchType bigBed
 
 searchTable decipherDDG2P
 searchMethod exact
 searchType bigBed
 
 searchName decipherId
 searchTable decipher
 termRegex [0-9]+
 searchType bed
 searchPriority 50
 
 searchName decipherSnvsId
 searchTable decipherSnvs
 termRegex [0-9]+
 searchType bed
 searchPriority 50