a20a64637b2a8bddd07aa4071beb839daa464230
hiram
  Tue Jan 14 10:53:07 2025 -0800
using the faster python kmerPrint.py no redmine

diff --git src/hg/utils/automation/doTandemDup.pl src/hg/utils/automation/doTandemDup.pl
index d83e387..d2e45d2 100755
--- src/hg/utils/automation/doTandemDup.pl
+++ src/hg/utils/automation/doTandemDup.pl
@@ -138,31 +138,31 @@
 
   my $paraRun = &HgAutomate::paraRun();
 
   $bossScript->add(<<_EOF_
 twoBitInfo $twoBit stdout | cut -f1 > part.list
 printf '#!/bin/bash
 
 set -beEu -o pipefail
 
 export fa=\$1
 export result=\$2
 
 mkdir -p tmp
 
 twoBitToFa ${twoBit}:\$fa stdout \\
-  | $Bin/kmerPrint.pl $kmersMinus1 stdin | gzip -c > \$result
+  | $Bin/kmerPrint.py $kmersMinus1 stdin | gzip -c > \$result
 ' > runOne
 chmod +x runOne
 gensub2 part.list single gsub jobList
 $paraRun
 _EOF_
   );
   $bossScript->execute();
 } # doKmers()
 
 #########################################################################
 # * step: pairedEnds [bigClusterHub]
 sub doPairedEnds {
   my $prevRunDir = "$buildDir/kmers";
   my $runDir = "$buildDir/pairedEnds";
   my $paraHub = $bigClusterHub;