66a5094b52b1b49a14b72ddd612f6f08257f4c92 lrnassar Fri Jan 24 11:03:50 2025 -0800 Staging the VarChat track, refs #35081 diff --git src/hg/makeDb/trackDb/human/varsInPubs.html src/hg/makeDb/trackDb/human/varsInPubs.html index 766b9fda2ee..bccee32ef74 100644 --- src/hg/makeDb/trackDb/human/varsInPubs.html +++ src/hg/makeDb/trackDb/human/varsInPubs.html @@ -1,20 +1,28 @@ <H2>Description</H2> <p>The tracks that are listed here contain genetic variants and links to scientific publications that -mention them. The <i>Mastermind</i> track was created by Genomenom, a company that analyzes fulltext +mention them.</p> +<ul> +<li>The <b>Mastermind</b> track was created by Genomenom, a company that analyzes fulltext of publications with their own proprietary software with an unknown false -positive rate. The <i>AVADA</i> track was created in the Bejerano lab at +positive rate.</li> +<li>The <b><a target="_blank" href="https://varchat.engenome.com/">VarChat</a></b> +track was created by enGenome and links to its proprietary +software, VarChat, with an unknown false positive rate.</li> +<li>The <b>AVADA</b> track was created in the Bejerano lab at Stanford by J. Birgmeier also on fulltext papers, using sophisticated machine learning -methods and was evaluated to have a false positive rate of around 50% in their study. -The <i>PubTator rsIDs</i> track was created using -<a href="https://ftp.ncbi.nlm.nih.gov/pub/lu/PubTator3/">PubTator 3 data</a>. +methods and was evaluated to have a false positive rate of around 50% in their study.</li> +<li>The <b>PubTator rsIDs</b> track was created using +<a href="https://ftp.ncbi.nlm.nih.gov/pub/lu/PubTator3/">PubTator 3 data</a>.</li> +</ul> + </p><p> For additional information please click on the hyperlink of the respective track above. <H2>Display conventions</H2> </p><p> By default, each variant is labeled with the nucleotide change. Hover over the feature to see more information, explained on the track details page of the particular track or when clicking onto the feature. </p> <H2>Credits</H2> <p> For data provenance, access and descriptions, please click the documentation via the link above. </p>