4fc10f8d260d0f77816cbadd6f64541b49bb272b mspeir Mon Jan 27 09:49:27 2025 -0800 adding images for new tutorial and tweaking makefile and lua file to including different bootstrap css file, refs #30335 diff --git docs/gb101.md docs/gb101.md index 7373822f0f7..040ca63e658 100644 --- docs/gb101.md +++ docs/gb101.md @@ -112,31 +112,34 @@ ACTCCCATTACGGGGGTGTCCC GGGCAGCGGGGCCGGAGGCTTA ATGCAAAGGC Please note, [BLAT](https://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#BLATAlign) is used if your search term is a DNA sequence. For the best results, make sure your sequence is long enough to meet BLAT specifications. The [examples](https://genome.ucsc.edu/goldenPath/help/query.html) link next to the search bar contains even more search queries.
-Genome selection +```image +src=../images/hgTracksSearchBarExample.png +width=100% +```
--- ### Highlights and Zooming
```image src=../images/highlightZoomGif.gif width=100% ``` @@ -175,33 +178,34 @@ ```image src=../images/rightClickAndGreyBarGif.gif width=95% ```
--- ### Track Display Modes
- +```image +src=../images/trackVisExamples.png +width=95% +```
Annotation tracks can be entirely hidden or shown in four different ways that take an increasing amount of vertical space: [dense, squish, pack, and full](../goldenPath/help/hgTracksHelp.html#TRACK_CONT). *Pack display is the recommended visibility for most data types as it provides the best balance of information and space.* After changing a track's display mode, the change will not be applied until you refresh the page. You can either refresh the page manually using your web browser or click on any of the track groups. @@ -214,33 +218,34 @@
Having trouble finding a dataset for your genome assembly? The [Track Search](../cgi-bin/hgTracks?hgt_tSearch=track+search) feature allows searching for terms in track names, descriptions, groups, and ENCODE metadata. More information about can be found on the following [help page](../goldenPath/help/trackSearch.html). The Track Search feature can also be accessed by hovering over the "Genome Browser" drop-down menu.
- +```image +src=../images/trackSearchSimpleExample.png +width=90% +```
--- ### Configuring the Genome Browser Display
```image src=../images/configureGif.gif width=90% ```