97338dbf71b671d85cedc20b099f360e0ec06785 gperez2 Tue Feb 18 16:48:53 2025 -0800 Code review edits, refs #35243 diff --git src/hg/makeDb/trackDb/human/spliceImpactSuper.html src/hg/makeDb/trackDb/human/spliceImpactSuper.html index 8af532fbc7e..f1239846f02 100644 --- src/hg/makeDb/trackDb/human/spliceImpactSuper.html +++ src/hg/makeDb/trackDb/human/spliceImpactSuper.html @@ -64,31 +64,32 @@ <a href="http://hgdownload.soe.ucsc.edu/gbdb/$db/splicevardb/" target="_blank">our download server</a>. The file for this track is called <tt>SVADB.bb</tt>. Individual regions or the whole genome annotation can be obtained using our tool <tt>bigBedToBed</tt> which can be compiled from the source code or downloaded as a precompiled binary for your system. Instructions for downloading source code and binaries can be found <a href="http://hgdownload.soe.ucsc.edu/downloads.html#utilities_downloads">here</a>. The tool can also be used to obtain only features within a given range, e.g. <tt>bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/splicevardb/SVADB.bb -chrom=chr21 -start=0 -end=100000000 stdout</tt></p> </p> </p> <h2>Methods</h2> <p> -The data was converted by Patricia Sullivan from SpliceVarDB to bigLolly format, and the UCSC +The data was converted by Patricia Sullivan from SpliceVarDB to +<a href="../../goldenPath/help/bigLolly.html">bigLolly format</a>, and the UCSC Browser staff downloaded it for display. </p> <h2>Credits</h2> <p>Thanks to the SpliceVarDB team for converting the data into our data formats.</p> <h2>References</h2> <p> Sullivan PJ, Quinn JMW, Wu W, Pinese M, Cowley MJ. <a href="https://linkinghub.elsevier.com/retrieve/pii/S0002-9297(24)00288-X" target="_blank"> SpliceVarDB: A comprehensive database of experimentally validated human splicing variants</a>. <em>Am J Hum Genet</em>. 2024 Oct 3;111(10):2164-2175. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/39226898" target="_blank">39226898</a>; PMC: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11480807/" target="_blank">PMC11480807</a> </p>