52d89c6d3d4b84de8e344bdc727f6d8263edc7c8 gperez2 Mon Feb 24 09:30:54 2025 -0800 Updating pennantIcons for the release of the enGenome VarChat track, refs #35081 diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra index 2374eaba2a2..1c7c6f26192 100644 --- src/hg/makeDb/trackDb/human/trackDb.ra +++ src/hg/makeDb/trackDb/human/trackDb.ra @@ -148,31 +148,31 @@ group phenDis visibility hide color 0,100,0 type bigBed 9 + release alpha mouseOverField trait bigDataUrl /gbdb/$D/bbi/phegeni.bb urls studyId=https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=$$ geneId1=https://www.ncbi.nlm.nih.gov/gene/?term=$$%5Buid%5D geneId2=https://www.ncbi.nlm.nih.gov/gene/?term=$$%5Buid%5D analysisId=https://www.ncbi.nlm.nih.gov/projects/SNP/gViewer/gView.cgi?aid=$$ catalogId=https://www.ebi.ac.uk/gwas/search?query=$$ track varsInPubs shortLabel Variants in Papers longLabel Genetic Variants mentioned in scientific publications superTrack on group phenDis type bed 3 -pennantIcon Updated red ../goldenPath/newsarch.html "Updated February, 2025" +pennantIcon Updated red ../goldenPath/newsarch.html#022425 "Updated Feb. 24, 2025" track mastermind shortLabel Mastermind Variants longLabel Genomenon Mastermind Variants extracted from full text publications visibility dense type bigBed 9 + urls url=$$ bigDataUrl /gbdb/$D/bbi/mastermind.bb noScoreFilter on exonNumbers off mouseOverField _mouseOver itemRgb on filter.mmcnt1 0 filter.mmcnt2 0 filter.mmcnt3 0 @@ -201,31 +201,31 @@ visibility dense type bigBed 9 + 4 bigDataUrl /gbdb/$D/bbi/varChat.bb noScoreFilter on exonNumbers off parent varsInPubs pack maxWindowCoverage 40000 maxItems 1000000 mouseOverField _mouseOver url https://varchat.engenome.com/search?source=ucsc&text=$<VariantUrl> urlLabel Open Variant on VarChat bedNameLabel Nucleotide Change skipFields Variant,VariantUrl,score detailsDynamicTable VariantDetails|Variant Details dataVersion /gbdb/$D/bbi/varChatVersion.txt - pennantIcon New red ../goldenPath/newsarch.html "Released February, 2025" + pennantIcon New red ../goldenPath/newsarch.html#022425 "Released Feb. 24, 2025" track pubtator shortLabel PubTator variants longLabel dbSNP variants and other genetic variants grounded to dbSNP by tmVar; collected by PubTator3 visibility dense type bigBed 9 + bigDataUrl /gbdb/$D/pubs2/pubtatorDbSnp.bb noScoreFilter on exonNumbers off itemRgb on parent varsInPubs pack urls pubmedIds="https://www.ncbi.nlm.nih.gov/pubmed/$$" mouseOver $name found in ${numPubmedIds} PubMed articles track varaico