File Changes for hiram

v478_preview2 to v478_base (2025-02-17 to 2025-02-24) v478

• src/hg/makeDb/doc/asmHubs/README.txt
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    87586a71c52ad59bc437786485e7e900cae367ee Mon Feb 24 07:19:52 2025 -0800
    up to date error checking refs #35201
• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 12, context: html, text, full: html, text
    f57df65b77591fb1aad3208fac9ce2442f658234 Tue Feb 18 15:30:46 2025 -0800
    adding 12 assemblies per user request refs #29545
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    5d7d739e101f89f82ef7c4ce1fdc9a1c413cdef1 Tue Feb 18 19:53:43 2025 -0800
    adding GCA_034509865.1_ASM3450986v1 chicken (Silkie 2023) per user request refs #29545
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    045f9d50d5be5de9489a7c1e044757aef3469142 Wed Feb 19 09:04:30 2025 -0800
    adding GCA_037788925.1_MytGallo_primary_0.1 Mediterranean mussel (MGYT20220701 primary hap 2024) per user request refs #29545
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    a256e54c8778078498ea06d7447e0d1591090a12 Thu Feb 20 10:03:20 2025 -0800
    added two birds per user request refs #29545
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    66c18ba2c82bf235f3dcc23936db901d9fb591f9 Mon Feb 24 08:59:39 2025 -0800
    VGP update refs #29545
• src/hg/makeDb/doc/asmHubs/reRunTrackDb.sh
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    89f7e9cc7e39854c535c49875835fa1b54bacaa4 Wed Feb 19 13:43:45 2025 -0800
    script to re-run a trackDb build refs #35201
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    e82cf3f6e6233075340fa340802429e1f037d7c0 Wed Feb 19 13:53:06 2025 -0800
    using a cut on the file will allow using the order.tsv files refs #35201
• src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    5d7d739e101f89f82ef7c4ce1fdc9a1c413cdef1 Tue Feb 18 19:53:43 2025 -0800
    adding GCA_034509865.1_ASM3450986v1 chicken (Silkie 2023) per user request refs #29545
  • lines changed 2, context: html, text, full: html, text
    a256e54c8778078498ea06d7447e0d1591090a12 Thu Feb 20 10:03:20 2025 -0800
    added two birds per user request refs #29545
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    66c18ba2c82bf235f3dcc23936db901d9fb591f9 Mon Feb 24 08:59:39 2025 -0800
    VGP update refs #29545
• src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv
  • lines changed 6, context: html, text, full: html, text
    66c18ba2c82bf235f3dcc23936db901d9fb591f9 Mon Feb 24 08:59:39 2025 -0800
    VGP update refs #29545
• src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv
  • lines changed 12, context: html, text, full: html, text
    f57df65b77591fb1aad3208fac9ce2442f658234 Tue Feb 18 15:30:46 2025 -0800
    adding 12 assemblies per user request refs #29545
  • lines changed 1, context: html, text, full: html, text
    045f9d50d5be5de9489a7c1e044757aef3469142 Wed Feb 19 09:04:30 2025 -0800
    adding GCA_037788925.1_MytGallo_primary_0.1 Mediterranean mussel (MGYT20220701 primary hap 2024) per user request refs #29545
• src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt
  • lines changed 3, context: html, text, full: html, text
    66c18ba2c82bf235f3dcc23936db901d9fb591f9 Mon Feb 24 08:59:39 2025 -0800
    VGP update refs #29545
• src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv
  • lines changed 3, context: html, text, full: html, text
    66c18ba2c82bf235f3dcc23936db901d9fb591f9 Mon Feb 24 08:59:39 2025 -0800
    VGP update refs #29545
• src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
  • lines changed 10, context: html, text, full: html, text
    66c18ba2c82bf235f3dcc23936db901d9fb591f9 Mon Feb 24 08:59:39 2025 -0800
    VGP update refs #29545
• src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
  • lines changed 7, context: html, text, full: html, text
    66c18ba2c82bf235f3dcc23936db901d9fb591f9 Mon Feb 24 08:59:39 2025 -0800
    VGP update refs #29545
• src/hg/utils/automation/asmHubCpG.pl
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    ac0b61420ab00d96616349e7ea289406b9054932 Thu Feb 20 13:01:15 2025 -0800
    tolerant of missing CpG bbi files refs #29545
• src/hg/utils/automation/asmHubTrackDb.sh
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    5dcb723fb12fbac15ffdd0c3464fce6f722e2e7e Wed Feb 19 13:40:18 2025 -0800
    readjust default visibilities refs #35201
• src/inc/common.mk
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    34e8448fb29e6fd0bf3e6c48e00d53aa8ffdc4ed Thu Feb 20 10:38:04 2025 -0800
    a couple of updates for building on Mac OSX no redmine
• src/utils/userApps/mkREADME.sh
  • lines changed 4, context: html, text, full: html, text
    557bc870081c38719069925583655e530ca56920 Wed Feb 19 11:40:10 2025 -0800
    new program tabFmt needs special handling no redmine