30271e358055c61f7b60f1f5532939ca5756b5c2
lrnassar
  Tue Feb 18 16:53:22 2025 -0800
Adding the specific file that is different so the message is a little more descriptive.

diff --git src/hg/utils/otto/mitoMap/checkMitoMapUpdate.sh src/hg/utils/otto/mitoMap/checkMitoMapUpdate.sh
index f5a6aee7dc7..fa0bb53bf95 100755
--- src/hg/utils/otto/mitoMap/checkMitoMapUpdate.sh
+++ src/hg/utils/otto/mitoMap/checkMitoMapUpdate.sh
@@ -1,76 +1,76 @@
 #! /bin/bash
 
 cd /hive/data/outside/otto/mitoMap
 
 wget -q https://mitomap.org/downloads/VariantsControl.tsv -O variantsControl.latest.tsv
 wget -q https://mitomap.org/downloads/VariantsCoding.tsv -O variantsCoding.latest.tsv
 wget -q https://mitomap.org/downloads/MutationsRNA.tsv -O mutationsRNA.latest.tsv
 wget -q https://mitomap.org/downloads/MutationsCodingControl.tsv -O mutationsCodingControl.latest.tsv
 
 # Flag to track if any files are different
 run_script=false
 
 # Function to check if two files are the same
 check_files() {
   if ! cmp -s "$1" "$2"; then
-    echo "Updating MitoMap track..."
+    echo "Update needed for $2. Updating MitoMap track..."
     run_script=true
   fi
 }
 
 # Compare each pair of files
 check_files "mutationsCodingControl.latest.tsv" "mutationsCodingControl.tsv"
 check_files "mutationsRNA.latest.tsv" "mutationsRNA.tsv"
 check_files "variantsCoding.latest.tsv" "variantsCoding.tsv"
 check_files "variantsControl.latest.tsv" "variantsControl.tsv"
 
 # If any files were different, continue script execution
 if $run_script; then
   echo "Proceeding with MitoMap update..."
   # Add your script logic here
 else
   rm mutationsCodingControl.latest.tsv mutationsRNA.latest.tsv variantsCoding.latest.tsv variantsControl.latest.tsv
   exit 0
 fi
 
 python ./buildMitoMap.py
 
 oldCountDiseaseMuts=$(bigBedInfo mitoMapDiseaseMuts.bb | grep -i "itemCount" | awk '{print $NF}' | sed 's/,//g')
 oldCountVars=$(bigBedInfo mitoMapVars.bb | grep -i "itemCount" | awk '{print $NF}' | sed 's/,//g')
 
 newCountDiseaseMuts=$(bigBedInfo mitoMapDiseaseMuts.new.bb | grep -i "itemCount" | awk '{print $NF}' | sed 's/,//g')
 newCountVars=$(bigBedInfo mitoMapVars.new.bb | grep -i "itemCount" | awk '{print $NF}' | sed 's/,//g')
 
 # Calculate the percentage difference
 diffDiseaseMuts=$(echo "scale=2; (($newCountDiseaseMuts - $oldCountDiseaseMuts) / $oldCountDiseaseMuts) * 100" | bc)
 diffVars=$(echo "scale=2; (($newCountVars - $oldCountVars) / $oldCountVars) * 100" | bc)
 
 # Get the absolute values of the differences
 absDiffDiseaseMuts=$(echo "$diffDiseaseMuts" | sed 's/-//')
 absDiffVars=$(echo "$diffVars" | sed 's/-//')
 
 # Check if the absolute difference is greater than 20%
 if (( $(echo "$absDiffDiseaseMuts > 20" | bc -l) || $(echo "$absDiffVars > 20" | bc -l) )); then
     echo
     echo "Error: Difference in item count exceeds 20%."
     echo "Difference in disease mutations: $absDiffDiseaseMuts%"
     echo "Difference in variants: $absDiffVars%"
     exit 1
 fi
 
 # If the difference is within the 20%, proceed
 mv mitoMapDiseaseMuts.new.bb mitoMapDiseaseMuts.bb
 mv mitoMapVars.new.bb mitoMapVars.bb
 
 mv mutationsCodingControl.latest.tsv mutationsCodingControl.tsv
 mv mutationsRNA.latest.tsv mutationsRNA.tsv
 mv variantsCoding.latest.tsv variantsCoding.tsv
 mv variantsControl.latest.tsv variantsControl.tsv
 
 wget -q https://mitomap.org/update-date.txt -O version.txt
 
 echo
 echo "Item counts for disease mutation old vs. new bigBed. Old: $oldCountDiseaseMuts New: $newCountDiseaseMuts"
 echo "Item counts for variants old vs. new bigBed. Old: $oldCountVars New: $newCountVars"
 echo
 echo "MitoMap tracks built successfully."