0b9c2a6f9930555f65104385a9edcb00147a5bc6
braney
  Mon Feb 3 09:31:56 2025 -0800
add support for quikLifting mySQL beds.

diff --git src/hg/inc/quickLift.h src/hg/inc/quickLift.h
index 4fad6692afc..e3af0e33706 100644
--- src/hg/inc/quickLift.h
+++ src/hg/inc/quickLift.h
@@ -1,21 +1,27 @@
 /* quickLift genome annotations on the fly between assemblies using chain files */
 
 /* Copyright (C) 2023 The Regents of the University of California 
  * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #ifndef QUICKLIFT_H      
 #define QUICKLIFT_H      
 
+typedef struct slList *(*ItemLoader)(char **row);
+
 struct bigBedInterval *quickLiftIntervals(char *instaPortFile, struct bbiFile *bbi,   char *chrom, int start, int end, struct hash **pChainHash);
 /* Return intervals from "other" species that will map to the current window.
  * These intervals are NOT YET MAPPED to the current assembly.
  */
 
 struct bed *quickLiftBed(struct bbiFile *bbi, struct hash *chainHash, struct bigBedInterval *bb);
 /* Using chains stored in chainHash, port a bigBedInterval from another assembly to a bed
  * on the reference.
  */
 
+struct slList *quickLiftSql(struct sqlConnection *conn, char *quickLiftFile, char *table, char *chromName, int winStart, int winEnd,  char *query, char *extraWhere, ItemLoader loader, struct hash *chainHash);
+
 unsigned quickLiftGetChain(char *fromDb, char *toDb);
 /* Return the id from the quickLiftChain table for given assemblies. */
+
+struct bed *quickLiftBeds(struct bed *bedList, struct hash *chainHash, boolean blocked);
 #endif