File Changes for galt

v477_base to v478_preview (2025-02-03 to 2025-02-10) v478

• src/hg/encode/hgEncodeVocab/hgEncodeVocab.c
  • lines changed 5, context: html, text, full: html, text
    c5af95b7146dde46f2d2f70ecad1eb9b4c37b57f Mon Feb 3 17:36:09 2025 -0800
    Revert "Fixing security concern in hgEncodeVocab. fixes #287. Note that actual full cleanup by removing the unneeded encode/cv.ra from trackDb files has not been done yet., and making the code tolerate its presence or absence in the trackDb.ra files, at the start of the controlledVocabulary setting." This reverts commit 156dbcfc96c9a4a5eba481f8d979700b0ca1024e.
  • lines changed 5, context: html, text, full: html, text
    f20e513a5dcae8e821aaf7dcccfaf57ee4cd3cb1 Thu Feb 6 13:37:43 2025 -0800
    Reapply "Fixing security concern in hgEncodeVocab. fixes #287. Note that actual full cleanup by removing the unneeded encode/cv.ra from trackDb files has not been done yet., and making the code tolerate its presence or absence in the trackDb.ra files, at the start of the controlledVocabulary setting." This reverts commit c5af95b7146dde46f2d2f70ecad1eb9b4c37b57f.
• src/hg/hgc/peakClusters.c
  • lines changed 18, context: html, text, full: html, text
    7df3ba2728fb2b20ac6159bb4935b9ccd829e695 Thu Feb 6 13:31:32 2025 -0800
    squashed hgEncodeVocab-ra-danger-fix. fixes #287
• src/hg/inc/hui.h
  • lines changed 1, context: html, text, full: html, text
    c5af95b7146dde46f2d2f70ecad1eb9b4c37b57f Mon Feb 3 17:36:09 2025 -0800
    Revert "Fixing security concern in hgEncodeVocab. fixes #287. Note that actual full cleanup by removing the unneeded encode/cv.ra from trackDb files has not been done yet., and making the code tolerate its presence or absence in the trackDb.ra files, at the start of the controlledVocabulary setting." This reverts commit 156dbcfc96c9a4a5eba481f8d979700b0ca1024e.
  • lines changed 1, context: html, text, full: html, text
    f20e513a5dcae8e821aaf7dcccfaf57ee4cd3cb1 Thu Feb 6 13:37:43 2025 -0800
    Reapply "Fixing security concern in hgEncodeVocab. fixes #287. Note that actual full cleanup by removing the unneeded encode/cv.ra from trackDb files has not been done yet., and making the code tolerate its presence or absence in the trackDb.ra files, at the start of the controlledVocabulary setting." This reverts commit c5af95b7146dde46f2d2f70ecad1eb9b4c37b57f.
• src/hg/lib/cv.c
  • lines changed 1, context: html, text, full: html, text
    c5af95b7146dde46f2d2f70ecad1eb9b4c37b57f Mon Feb 3 17:36:09 2025 -0800
    Revert "Fixing security concern in hgEncodeVocab. fixes #287. Note that actual full cleanup by removing the unneeded encode/cv.ra from trackDb files has not been done yet., and making the code tolerate its presence or absence in the trackDb.ra files, at the start of the controlledVocabulary setting." This reverts commit 156dbcfc96c9a4a5eba481f8d979700b0ca1024e.
  • lines changed 1, context: html, text, full: html, text
    f20e513a5dcae8e821aaf7dcccfaf57ee4cd3cb1 Thu Feb 6 13:37:43 2025 -0800
    Reapply "Fixing security concern in hgEncodeVocab. fixes #287. Note that actual full cleanup by removing the unneeded encode/cv.ra from trackDb files has not been done yet., and making the code tolerate its presence or absence in the trackDb.ra files, at the start of the controlledVocabulary setting." This reverts commit c5af95b7146dde46f2d2f70ecad1eb9b4c37b57f.
• src/hg/lib/hui.c
  • lines changed 16, context: html, text, full: html, text
    c5af95b7146dde46f2d2f70ecad1eb9b4c37b57f Mon Feb 3 17:36:09 2025 -0800
    Revert "Fixing security concern in hgEncodeVocab. fixes #287. Note that actual full cleanup by removing the unneeded encode/cv.ra from trackDb files has not been done yet., and making the code tolerate its presence or absence in the trackDb.ra files, at the start of the controlledVocabulary setting." This reverts commit 156dbcfc96c9a4a5eba481f8d979700b0ca1024e.
  • lines changed 0, context: html, text, full: html, text
    7df3ba2728fb2b20ac6159bb4935b9ccd829e695 Thu Feb 6 13:31:32 2025 -0800
    squashed hgEncodeVocab-ra-danger-fix. fixes #287
  • lines changed 16, context: html, text, full: html, text
    f20e513a5dcae8e821aaf7dcccfaf57ee4cd3cb1 Thu Feb 6 13:37:43 2025 -0800
    Reapply "Fixing security concern in hgEncodeVocab. fixes #287. Note that actual full cleanup by removing the unneeded encode/cv.ra from trackDb files has not been done yet., and making the code tolerate its presence or absence in the trackDb.ra files, at the start of the controlledVocabulary setting." This reverts commit c5af95b7146dde46f2d2f70ecad1eb9b4c37b57f.