53b21444c44530593b37529acb63d2a74f7f4f28 jcasper Sun Feb 9 01:11:15 2025 -0800 Installing updated hg.conf files from UCSC servers diff --git confs/hgwdev.hg.conf confs/hgwdev.hg.conf index 98944f2411e..bdace77f1a3 100644 --- confs/hgwdev.hg.conf +++ confs/hgwdev.hg.conf @@ -374,31 +374,33 @@ hgPhyloPlaceEnabled=on nextstrainHost=https://nextstrain.org microbeTraceHost=https://cdcgov.github.io hgPhyloPlaceServerDir=/data/apache/userdata/hgPhyloPlace/genome-test # Enable svg based bar charts #svgBarChart=on # Move multi-region button above image #multiRegionButtonTop=on # Related tracks db.relatedTrack=relatedTrack # prefix to genark hubs -genarkHubPrefix=https://hgdownload.soe.ucsc.edu/hubs +### genarkHubPrefix=https://hgdownload.soe.ucsc.edu/hubs +### trying hosting from /gbdb/genark - 2025-02-06 - Hiram +genarkHubPrefix=/gbdb/genark # Database specific settings wuhCor1_TopLink=http://genome.ucsc.edu/goldenPath/help/covidBrowserIntro.html wuhCor1_TopLinkLabel=Quick start guide # Assembly-specific html (e.g. links to more info) GCA_009914755.4_html=<b><a target=_blank style='font-size:small; position: absolute; margin-left: 1em' href='/goldenPath/newsarch.html#041222'>What is human CHM13-T2T?</a></b> ### bottleneck delay multiplier for custom tracks, an integer >= 1 ### useful range here is from 1 to about 10. This will hogExit ### robots that are continuously loading custom tracks. customTracks.botCheckMult=3 ### custom track submitted, additional penalty ### botCheckMult added penalty decay time # 1 140 millis 14 seconds @@ -436,21 +438,26 @@ canDoHgcInPopUp=true browser.exportedDataHubs=on # Enables the grouping feature for track hubs trackHubsCanAddGroups=on # see #33023 bigBedMaxItems=100000 # Default itemRgb for bigBed tracks with enough fields (see #28498) alwaysItemRgb=on # hubSpace related settings: # show the hubSpace UI -storeUserFiles=false +storeUserFiles=true # location of files stored by tusd userDataDir=/hive/users/chmalee/tmp/userDataDir +# The tusd endpoint files are uploaded to +hubSpaceTusdEndpoint=https://hgwdev-hubspace.gi.ucsc.edu/files +# The web accessible location after tusd moves the files +# when an upload is completed +hubSpaceUrl=https://hgwdev.gi.ucsc.edu/hubspace # let users create an api key on the hub development tab to use hubSpace from the command line showHubApiKey=true