8debce5b56bcc570ddff4226bf9b04c30e4f6f29 markd Wed Feb 5 12:48:04 2025 -0800 import of GENCODE Versions VM37, V48, V48lift37 diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk index c1d95f23726..f4ba4cf8e9d 100644 --- src/hg/makeDb/outside/gencode/gencodeLoad.mk +++ src/hg/makeDb/outside/gencode/gencodeLoad.mk @@ -20,44 +20,44 @@ host=$(shell hostname) ppid=$(shell echo $$PPID) tmpExt = ${host}.${ppid}.tmp SHELL = bash -e export SHELLOPTS=pipefail ## # programs, etc ## mach = $(shell uname -m) ## # Release info and files from Sanger. # BEGIN EDIT THESE EACH RELEASE ## -#preRelease = yes -preRelease = no +preRelease = yes +#preRelease = no #db = hg38 #db = hg19 db = mm39 ifeq (${db},mm39) - ver = M36 - prevVer = M35 + ver = M37 + prevVer = M36 else ifeq (${db},hg38) - ver = 47 - prevVer = 46 + ver = 48 + prevVer = 47 else ifeq (${db},hg19) - verBase = 47 - prevVerBase = 46 + verBase = 48 + prevVerBase = 47 ver = ${verBase}lift37 else $(error unimplement genome database: ${db}) endif # END EDIT THESE EACH RELEASE ifeq (${db},mm39) grcRefAssembly = GRCm39 gencodeOrg = Gencode_mouse ftpReleaseSubdir = release_${ver} annGffTypeName = chr_patch_hapl_scaff.annotation else ifeq (${db},hg38) grcRefAssembly = GRCh38 gencodeOrg = Gencode_human ftpReleaseSubdir = release_${ver}